Gene annotation
Transcriptome id Sobic.003G224300.1
Synonym Sb03g028260
Functional annotation ribosomal protein L6, putative, expressed
UniProt C5XR51
Pfam PF00347
Panther DB PTHR11655 PTHR11655:SF17
NCBI CDD -
KEGG Orthology K02933; RP-L6, MRPL6, large subunit ribosomal protein L6
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G18400 : ribosomal protein L6 family protein
RAP-DB (Rice) LOC_Os03g51510.3 : ribosomal protein L6, putative, expressed
MaizeGDB (Corn) Zm00025a032270
Brachypodium -
Barley HORVU5Hr1G026360.2 , HORVU5Hr1G026360.3 , HORVU5Hr1G026360.1 , HORVU5Hr1G026360.6 , HORVU5Hr1G026360.7 , HORVU5Hr1G026360.4 , HORVU5Hr1G026360.5 , HORVU4Hr1G009420.2 , HORVU4Hr1G009420.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G224300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
2 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
3 Sobic.002G087000 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
4 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
5 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
6 Sobic.009G164700 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
7 Sobic.001G402600 expressed protein -
8 Sobic.007G024200 ribosome, putative, expressed -
9 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
10 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
11 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
12 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
13 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
14 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
15 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
16 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
17 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
18 Sobic.002G357900 expressed protein -
19 Sobic.003G217100 Yip1 domain containing protein, expressed -
20 Sobic.003G118400 expressed protein -


Gene co-expression network
sample Sobic003G224300 Sobic003G224300 Sobic001G035400 Sobic001G035400 Sobic003G224300--Sobic001G035400 Sobic003G148900 Sobic003G148900 Sobic003G224300--Sobic003G148900 Sobic002G087000 Sobic002G087000 Sobic003G224300--Sobic002G087000 Sobic001G392800 Sobic001G392800 Sobic003G224300--Sobic001G392800 Sobic010G059700 Sobic010G059700 Sobic003G224300--Sobic010G059700 Sobic009G164700 Sobic009G164700 Sobic003G224300--Sobic009G164700 Sobic001G402600 Sobic001G402600 Sobic003G224300--Sobic001G402600 Sobic007G024200 Sobic007G024200 Sobic003G224300--Sobic007G024200 Sobic010G277000 Sobic010G277000 Sobic003G224300--Sobic010G277000 Sobic004G344800 Sobic004G344800 Sobic001G035400--Sobic004G344800 Sobic006G203900 Sobic006G203900 Sobic001G035400--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic001G035400--Sobic009G164700 Sobic001G035400--Sobic002G087000 Sobic001G073600 Sobic001G073600 Sobic001G035400--Sobic001G073600 Sobic001G443200 Sobic001G443200 Sobic001G035400--Sobic001G443200 Sobic001G116000 Sobic001G116000 Sobic001G035400--Sobic001G116000 Sobic003G200600 Sobic003G200600 Sobic003G148900--Sobic003G200600 Sobic007G117800 Sobic007G117800 Sobic003G148900--Sobic007G117800 Sobic002G027800 Sobic002G027800 Sobic003G148900--Sobic002G027800 Sobic007G012900 Sobic007G012900 Sobic003G148900--Sobic007G012900 Sobic008G110500 Sobic008G110500 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic001G421400 Sobic001G421400 Sobic003G148900--Sobic001G421400 Sobic003G128300 Sobic003G128300 Sobic003G148900--Sobic003G128300 Sobic003G148900--Sobic003G224300 Sobic002G087000--Sobic001G035400 Sobic002G141700 Sobic002G141700 Sobic002G087000--Sobic002G141700 Sobic002G087000--Sobic001G443200 Sobic009G234400 Sobic009G234400 Sobic002G087000--Sobic009G234400 Sobic001G196100 Sobic001G196100 Sobic002G087000--Sobic001G196100 Sobic007G176200 Sobic007G176200 Sobic002G087000--Sobic007G176200 Sobic002G087000--Sobic003G224300 Sobic006G211800 Sobic006G211800 Sobic002G087000--Sobic006G211800 Sobic005G105500 Sobic005G105500 Sobic002G087000--Sobic005G105500 Sobic002G262200 Sobic002G262200 Sobic001G392800--Sobic002G262200 Sobic003G217100 Sobic003G217100 Sobic001G392800--Sobic003G217100 Sobic002G090700 Sobic002G090700 Sobic001G392800--Sobic002G090700 Sobic001G392800--Sobic001G035400 Sobic004G159000 Sobic004G159000 Sobic001G392800--Sobic004G159000 Sobic001G392800--Sobic004G344800 Sobic009G001900 Sobic009G001900 Sobic001G392800--Sobic009G001900 Sobic009G112900 Sobic009G112900 Sobic001G392800--Sobic009G112900 Sobic004G066800 Sobic004G066800 Sobic001G392800--Sobic004G066800 Sobic007G036800 Sobic007G036800 Sobic010G059700--Sobic007G036800 Sobic002G306600 Sobic002G306600 Sobic010G059700--Sobic002G306600 Sobic009G063800 Sobic009G063800 Sobic010G059700--Sobic009G063800 Sobic010G059700--Sobic003G224300 Sobic007G146600 Sobic007G146600 Sobic010G059700--Sobic007G146600 Sobic003G222700 Sobic003G222700 Sobic010G059700--Sobic003G222700 Sobic010G059700--Sobic003G148900 Sobic004G145600 Sobic004G145600 Sobic010G059700--Sobic004G145600 Sobic007G022700 Sobic007G022700 Sobic010G059700--Sobic007G022700 Sobic009G164700--Sobic001G035400 Sobic009G164700--Sobic007G092100 Sobic001G542900 Sobic001G542900 Sobic009G164700--Sobic001G542900 Sobic001G010700 Sobic001G010700 Sobic009G164700--Sobic001G010700 Sobic003G330500 Sobic003G330500 Sobic009G164700--Sobic003G330500 Sobic009G164700--Sobic001G196100 Sobic009G164700--Sobic006G203900 Sobic009G164700--Sobic004G066800 Sobic001G096100 Sobic001G096100 Sobic009G164700--Sobic001G096100 Sobic004G242100 Sobic004G242100 Sobic001G402600--Sobic004G242100 Sobic007G192100 Sobic007G192100 Sobic001G402600--Sobic007G192100 Sobic001G126200 Sobic001G126200 Sobic001G402600--Sobic001G126200 Sobic001G402600--Sobic007G092100 Sobic003G358300 Sobic003G358300 Sobic001G402600--Sobic003G358300 Sobic006G143500 Sobic006G143500 Sobic001G402600--Sobic006G143500 Sobic001G285300 Sobic001G285300 Sobic001G402600--Sobic001G285300 Sobic001G402600--Sobic003G224300 Sobic007G073600 Sobic007G073600 Sobic001G402600--Sobic007G073600 Sobic007G024200--Sobic003G224300 Sobic002G413400 Sobic002G413400 Sobic007G024200--Sobic002G413400 Sobic007G024200--Sobic001G126200 Sobic007G024200--Sobic003G217100 Sobic003G214300 Sobic003G214300 Sobic007G024200--Sobic003G214300 Sobic007G024200--Sobic009G112900 Sobic007G024200--Sobic001G392800 Sobic008G175100 Sobic008G175100 Sobic007G024200--Sobic008G175100 Sobic003G084750 Sobic003G084750 Sobic007G024200--Sobic003G084750 Sobic010G277000--Sobic008G084100 Sobic007G191600 Sobic007G191600 Sobic010G277000--Sobic007G191600 Sobic010G277000--Sobic001G035400 Sobic001G214900 Sobic001G214900 Sobic010G277000--Sobic001G214900 Sobic003G238500 Sobic003G238500 Sobic010G277000--Sobic003G238500 Sobic001G026600 Sobic001G026600 Sobic010G277000--Sobic001G026600 Sobic002G054000 Sobic002G054000 Sobic010G277000--Sobic002G054000 Sobic003G205400 Sobic003G205400 Sobic010G277000--Sobic003G205400 Sobic005G027300 Sobic005G027300 Sobic010G277000--Sobic005G027300
Octagon: transcription factors


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