Gene annotation
Transcriptome id Sobic.007G024200.1
Synonym GHS1, Sb07g002120
Functional annotation ribosome, putative, expressed
UniProt C5YMI4
Pfam PF01165
Panther DB PTHR21109 PTHR21109:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G27160 : Ribosomal protein S21 family protein
RAP-DB (Rice) LOC_Os08g02840.1 : ribosome, putative, expressed
MaizeGDB (Corn) Zm00025a030214
Brachypodium -
Barley -
Wheat TraesCS7B02G214500 , TraesCS7D02G310400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G224300 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
2 Sobic.002G413400 ribosomal protein, putative, expressed K14842: ribosome biogenesis protein NSA2
3 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
4 Sobic.003G217100 Yip1 domain containing protein, expressed -
5 Sobic.003G214300 expressed protein -
6 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
7 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
8 Sobic.008G175100 expressed protein K17422: large subunit ribosomal protein L41
9 Sobic.003G084750 - -
10 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
11 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
12 Sobic.006G251701 - -
13 Sobic.007G191600 exosome complex exonuclease, putative, expressed K12586: RRP43, EXOSC8, exosome complex component RRP43
14 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
15 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
16 Sobic.007G184200 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
17 Sobic.001G402600 expressed protein -
18 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
19 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
20 Sobic.003G237400 plastidic ATP/ADP-transporter, putative, expressed K03301: ATP:ADP antiporter, AAA family


Gene co-expression network
sample Sobic007G024200 Sobic007G024200 Sobic003G224300 Sobic003G224300 Sobic007G024200--Sobic003G224300 Sobic002G413400 Sobic002G413400 Sobic007G024200--Sobic002G413400 Sobic001G126200 Sobic001G126200 Sobic007G024200--Sobic001G126200 Sobic003G217100 Sobic003G217100 Sobic007G024200--Sobic003G217100 Sobic003G214300 Sobic003G214300 Sobic007G024200--Sobic003G214300 Sobic009G112900 Sobic009G112900 Sobic007G024200--Sobic009G112900 Sobic001G392800 Sobic001G392800 Sobic007G024200--Sobic001G392800 Sobic008G175100 Sobic008G175100 Sobic007G024200--Sobic008G175100 Sobic003G084750 Sobic003G084750 Sobic007G024200--Sobic003G084750 Sobic001G035400 Sobic001G035400 Sobic003G224300--Sobic001G035400 Sobic003G148900 Sobic003G148900 Sobic003G224300--Sobic003G148900 Sobic002G087000 Sobic002G087000 Sobic003G224300--Sobic002G087000 Sobic003G224300--Sobic001G392800 Sobic010G059700 Sobic010G059700 Sobic003G224300--Sobic010G059700 Sobic009G164700 Sobic009G164700 Sobic003G224300--Sobic009G164700 Sobic001G402600 Sobic001G402600 Sobic003G224300--Sobic001G402600 Sobic003G224300--Sobic007G024200 Sobic010G277000 Sobic010G277000 Sobic003G224300--Sobic010G277000 Sobic001G402300 Sobic001G402300 Sobic002G413400--Sobic001G402300 Sobic009G232000 Sobic009G232000 Sobic002G413400--Sobic009G232000 Sobic009G008600 Sobic009G008600 Sobic002G413400--Sobic009G008600 Sobic010G100000 Sobic010G100000 Sobic002G413400--Sobic010G100000 Sobic006G222400 Sobic006G222400 Sobic002G413400--Sobic006G222400 Sobic003G424800 Sobic003G424800 Sobic002G413400--Sobic003G424800 Sobic002G413400--Sobic001G126200 Sobic001G513500 Sobic001G513500 Sobic002G413400--Sobic001G513500 Sobic008G130400 Sobic008G130400 Sobic002G413400--Sobic008G130400 Sobic001G126200--Sobic006G222400 Sobic004G224800 Sobic004G224800 Sobic001G126200--Sobic004G224800 Sobic006G094600 Sobic006G094600 Sobic001G126200--Sobic006G094600 Sobic003G131300 Sobic003G131300 Sobic001G126200--Sobic003G131300 Sobic001G285300 Sobic001G285300 Sobic001G126200--Sobic001G285300 Sobic010G238700 Sobic010G238700 Sobic001G126200--Sobic010G238700 Sobic001G367000 Sobic001G367000 Sobic001G126200--Sobic001G367000 Sobic002G044000 Sobic002G044000 Sobic001G126200--Sobic002G044000 Sobic007G192100 Sobic007G192100 Sobic001G126200--Sobic007G192100 Sobic001G105100 Sobic001G105100 Sobic003G217100--Sobic001G105100 Sobic002G090700 Sobic002G090700 Sobic003G217100--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic003G217100--Sobic008G132800 Sobic003G217100--Sobic006G222400 Sobic001G309500 Sobic001G309500 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic001G237500 Sobic001G237500 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic006G142400 Sobic006G142400 Sobic003G214300--Sobic006G142400 Sobic008G098600 Sobic008G098600 Sobic003G214300--Sobic008G098600 Sobic001G499000 Sobic001G499000 Sobic003G214300--Sobic001G499000 Sobic004G072800 Sobic004G072800 Sobic003G214300--Sobic004G072800 Sobic010G264000 Sobic010G264000 Sobic003G214300--Sobic010G264000 Sobic009G131900 Sobic009G131900 Sobic003G214300--Sobic009G131900 Sobic010G247400 Sobic010G247400 Sobic003G214300--Sobic010G247400 Sobic001G061200 Sobic001G061200 Sobic003G214300--Sobic001G061200 Sobic007G162800 Sobic007G162800 Sobic003G214300--Sobic007G162800 Sobic008G102600 Sobic008G102600 Sobic009G112900--Sobic008G102600 Sobic001G518500 Sobic001G518500 Sobic009G112900--Sobic001G518500 Sobic001G060300 Sobic001G060300 Sobic009G112900--Sobic001G060300 Sobic002G262200 Sobic002G262200 Sobic009G112900--Sobic002G262200 Sobic009G112900--Sobic008G175100 Sobic004G159000 Sobic004G159000 Sobic009G112900--Sobic004G159000 Sobic003G196600 Sobic003G196600 Sobic009G112900--Sobic003G196600 Sobic001G342200 Sobic001G342200 Sobic009G112900--Sobic001G342200 Sobic010G007400 Sobic010G007400 Sobic009G112900--Sobic010G007400 Sobic001G392800--Sobic002G262200 Sobic001G392800--Sobic003G217100 Sobic001G392800--Sobic002G090700 Sobic001G392800--Sobic001G035400 Sobic001G392800--Sobic004G159000 Sobic004G344800 Sobic004G344800 Sobic001G392800--Sobic004G344800 Sobic009G001900 Sobic009G001900 Sobic001G392800--Sobic009G001900 Sobic001G392800--Sobic009G112900 Sobic004G066800 Sobic004G066800 Sobic001G392800--Sobic004G066800 Sobic008G175100--Sobic009G112900 Sobic008G175100--Sobic001G518500 Sobic008G175100--Sobic003G196600 Sobic008G175100--Sobic008G102600 Sobic007G019100 Sobic007G019100 Sobic008G175100--Sobic007G019100 Sobic008G175100--Sobic001G342200 Sobic006G124300 Sobic006G124300 Sobic008G175100--Sobic006G124300 Sobic004G286100 Sobic004G286100 Sobic008G175100--Sobic004G286100 Sobic001G112400 Sobic001G112400 Sobic008G175100--Sobic001G112400 Sobic009G032300 Sobic009G032300 Sobic003G084750--Sobic009G032300 Sobic008G129100 Sobic008G129100 Sobic003G084750--Sobic008G129100 Sobic006G130200 Sobic006G130200 Sobic003G084750--Sobic006G130200 Sobic010G174800 Sobic010G174800 Sobic003G084750--Sobic010G174800 Sobic001G109500 Sobic001G109500 Sobic003G084750--Sobic001G109500 Sobic003G051200 Sobic003G051200 Sobic003G084750--Sobic003G051200 Sobic010G264400 Sobic010G264400 Sobic003G084750--Sobic010G264400 Sobic005G180700 Sobic005G180700 Sobic003G084750--Sobic005G180700 Sobic004G152000 Sobic004G152000 Sobic003G084750--Sobic004G152000
Octagon: transcription factors


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