Gene annotation
Transcriptome id Sobic.007G191600.1
Synonym Sb07g026060
Functional annotation exosome complex exonuclease, putative, expressed
UniProt C5YHQ9
Pfam PF03725 PF01138
Panther DB PTHR11097 PTHR11097:SF9
NCBI CDD KOG1613; Exosomal 3'-5' exoribonuclease complex, subunit Rrp43
KEGG Orthology K12586; RRP43, EXOSC8, exosome complex component RRP43
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60080 : 3\'-5\'-exoribonuclease family protein
RAP-DB (Rice) LOC_Os11g20689.1 : exosome complex exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a005288 , Zm00025a030439
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
2 Sobic.003G261100 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
3 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
4 Sobic.003G237400 plastidic ATP/ADP-transporter, putative, expressed K03301: ATP:ADP antiporter, AAA family
5 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
6 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
7 Sobic.001G060300 expressed protein -
8 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
9 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
10 Sobic.001G214900 expressed protein -
11 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
12 Sobic.002G262200 expressed protein -
13 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
14 Sobic.001G018200 prohibitin-2, putative, expressed K17081: prohibitin 2
15 Sobic.004G294900 expressed protein -
16 Sobic.004G164000 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
17 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
18 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
19 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
20 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9


Gene co-expression network
sample Sobic007G191600 Sobic007G191600 Sobic010G277000 Sobic010G277000 Sobic007G191600--Sobic010G277000 Sobic003G261100 Sobic003G261100 Sobic007G191600--Sobic003G261100 Sobic005G027300 Sobic005G027300 Sobic007G191600--Sobic005G027300 Sobic003G237400 Sobic003G237400 Sobic007G191600--Sobic003G237400 Sobic003G113400 Sobic003G113400 Sobic007G191600--Sobic003G113400 Sobic008G084100 Sobic008G084100 Sobic007G191600--Sobic008G084100 Sobic001G060300 Sobic001G060300 Sobic007G191600--Sobic001G060300 Sobic001G342200 Sobic001G342200 Sobic007G191600--Sobic001G342200 Sobic001G392800 Sobic001G392800 Sobic007G191600--Sobic001G392800 Sobic010G277000--Sobic008G084100 Sobic010G277000--Sobic007G191600 Sobic001G035400 Sobic001G035400 Sobic010G277000--Sobic001G035400 Sobic001G214900 Sobic001G214900 Sobic010G277000--Sobic001G214900 Sobic003G238500 Sobic003G238500 Sobic010G277000--Sobic003G238500 Sobic001G026600 Sobic001G026600 Sobic010G277000--Sobic001G026600 Sobic002G054000 Sobic002G054000 Sobic010G277000--Sobic002G054000 Sobic003G205400 Sobic003G205400 Sobic010G277000--Sobic003G205400 Sobic010G277000--Sobic005G027300 Sobic001G370700 Sobic001G370700 Sobic003G261100--Sobic001G370700 Sobic002G131600 Sobic002G131600 Sobic003G261100--Sobic002G131600 Sobic001G057300 Sobic001G057300 Sobic003G261100--Sobic001G057300 Sobic006G035900 Sobic006G035900 Sobic003G261100--Sobic006G035900 Sobic009G115700 Sobic009G115700 Sobic003G261100--Sobic009G115700 Sobic003G261100--Sobic007G191600 Sobic004G155100 Sobic004G155100 Sobic003G261100--Sobic004G155100 Sobic003G261100--Sobic001G214900 Sobic001G501600 Sobic001G501600 Sobic003G261100--Sobic001G501600 Sobic003G196800 Sobic003G196800 Sobic005G027300--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic005G027300--Sobic001G096100 Sobic008G098800 Sobic008G098800 Sobic005G027300--Sobic008G098800 Sobic009G001900 Sobic009G001900 Sobic005G027300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic005G027300--Sobic004G066800 Sobic005G027300--Sobic001G342200 Sobic001G025600 Sobic001G025600 Sobic005G027300--Sobic001G025600 Sobic001G481700 Sobic001G481700 Sobic005G027300--Sobic001G481700 Sobic001G513500 Sobic001G513500 Sobic005G027300--Sobic001G513500 Sobic001G031900 Sobic001G031900 Sobic003G237400--Sobic001G031900 Sobic004G159000 Sobic004G159000 Sobic003G237400--Sobic004G159000 Sobic003G237400--Sobic007G191600 Sobic003G237400--Sobic001G342200 Sobic009G224400 Sobic009G224400 Sobic003G237400--Sobic009G224400 Sobic009G112900 Sobic009G112900 Sobic003G237400--Sobic009G112900 Sobic003G237400--Sobic003G261100 Sobic004G344800 Sobic004G344800 Sobic003G237400--Sobic004G344800 Sobic007G013900 Sobic007G013900 Sobic003G237400--Sobic007G013900 Sobic003G167000 Sobic003G167000 Sobic003G113400--Sobic003G167000 Sobic009G041800 Sobic009G041800 Sobic003G113400--Sobic009G041800 Sobic004G334200 Sobic004G334200 Sobic003G113400--Sobic004G334200 Sobic003G113400--Sobic007G191600 Sobic001G203600 Sobic001G203600 Sobic003G113400--Sobic001G203600 Sobic004G043600 Sobic004G043600 Sobic003G113400--Sobic004G043600 Sobic002G402500 Sobic002G402500 Sobic003G113400--Sobic002G402500 Sobic010G250000 Sobic010G250000 Sobic003G113400--Sobic010G250000 Sobic001G052100 Sobic001G052100 Sobic003G113400--Sobic001G052100 Sobic008G084100--Sobic010G277000 Sobic008G084100--Sobic001G035400 Sobic008G084100--Sobic003G238500 Sobic001G073600 Sobic001G073600 Sobic008G084100--Sobic001G073600 Sobic007G048700 Sobic007G048700 Sobic008G084100--Sobic007G048700 Sobic008G084100--Sobic001G370700 Sobic001G413100 Sobic001G413100 Sobic008G084100--Sobic001G413100 Sobic002G232400 Sobic002G232400 Sobic008G084100--Sobic002G232400 Sobic006G203900 Sobic006G203900 Sobic008G084100--Sobic006G203900 Sobic001G060300--Sobic001G342200 Sobic001G178500 Sobic001G178500 Sobic001G060300--Sobic001G178500 Sobic001G060300--Sobic001G214900 Sobic004G262300 Sobic004G262300 Sobic001G060300--Sobic004G262300 Sobic001G060300--Sobic009G112900 Sobic001G060300--Sobic002G402500 Sobic008G136800 Sobic008G136800 Sobic001G060300--Sobic008G136800 Sobic010G194200 Sobic010G194200 Sobic001G060300--Sobic010G194200 Sobic009G012800 Sobic009G012800 Sobic001G060300--Sobic009G012800 Sobic001G342200--Sobic001G057300 Sobic001G342200--Sobic001G060300 Sobic007G177200 Sobic007G177200 Sobic001G342200--Sobic007G177200 Sobic007G115100 Sobic007G115100 Sobic001G342200--Sobic007G115100 Sobic007G092100 Sobic007G092100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic004G170400 Sobic004G170400 Sobic001G342200--Sobic004G170400 Sobic001G074700 Sobic001G074700 Sobic001G342200--Sobic001G074700 Sobic001G342200--Sobic001G031900 Sobic002G262200 Sobic002G262200 Sobic001G392800--Sobic002G262200 Sobic003G217100 Sobic003G217100 Sobic001G392800--Sobic003G217100 Sobic002G090700 Sobic002G090700 Sobic001G392800--Sobic002G090700 Sobic001G392800--Sobic001G035400 Sobic001G392800--Sobic004G159000 Sobic001G392800--Sobic004G344800 Sobic001G392800--Sobic009G001900 Sobic001G392800--Sobic009G112900 Sobic001G392800--Sobic004G066800
Octagon: transcription factors


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