Gene annotation
Transcriptome id Sobic.003G113400.1
Synonym RPL3P, Sb03g009550
Functional annotation ribosomal protein L3, putative, expressed
UniProt C5XFS1
Pfam PF00297
Panther DB PTHR11229
NCBI CDD KOG3141; Mitochondrial/chloroplast ribosomal protein L3
KEGG Orthology K02906; RP-L3, MRPL3, large subunit ribosomal protein L3
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G17465 : ribosomal protein L3 plastid
RAP-DB (Rice) LOC_Os01g14830.1 : ribosomal protein L3, putative, expressed
MaizeGDB (Corn) Zm00025a035360
Brachypodium KQK03605
Barley HORVU3Hr1G034240.4 , HORVU3Hr1G034240.1 , HORVU3Hr1G034240.2 , HORVU3Hr1G034240.3
Wheat TraesCS3A02G164700 , TraesCS3A02G164700 , TraesCS3B02G201400 , TraesCS3B02G201400 , TraesCS3D02G176800
Populus -


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cDNA sequences
Sobic.003G113400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G167000 protein phosphotase protein, putative, expressed -
2 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
3 Sobic.004G334200 ribosomal protein S15 containing protein, expressed -
4 Sobic.007G191600 exosome complex exonuclease, putative, expressed K12586: RRP43, EXOSC8, exosome complex component RRP43
5 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
6 Sobic.004G043600 expressed protein -
7 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
8 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
9 Sobic.001G052100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
10 Sobic.006G153200 OsClp7 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
11 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
12 Sobic.007G030600 NOL1/NOP2/sun family protein, putative, expressed -
13 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
14 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
15 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
16 Sobic.008G039000 expressed protein -
17 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
18 Sobic.006G220400 exonuclease, putative, expressed -
19 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
20 Sobic.009G227100 expressed protein -


Gene co-expression network
sample Sobic003G113400 Sobic003G113400 Sobic003G167000 Sobic003G167000 Sobic003G113400--Sobic003G167000 Sobic009G041800 Sobic009G041800 Sobic003G113400--Sobic009G041800 Sobic004G334200 Sobic004G334200 Sobic003G113400--Sobic004G334200 Sobic007G191600 Sobic007G191600 Sobic003G113400--Sobic007G191600 Sobic001G203600 Sobic001G203600 Sobic003G113400--Sobic001G203600 Sobic004G043600 Sobic004G043600 Sobic003G113400--Sobic004G043600 Sobic002G402500 Sobic002G402500 Sobic003G113400--Sobic002G402500 Sobic010G250000 Sobic010G250000 Sobic003G113400--Sobic010G250000 Sobic001G052100 Sobic001G052100 Sobic003G113400--Sobic001G052100 Sobic007G048700 Sobic007G048700 Sobic003G167000--Sobic007G048700 Sobic001G347700 Sobic001G347700 Sobic003G167000--Sobic001G347700 Sobic001G013200 Sobic001G013200 Sobic003G167000--Sobic001G013200 Sobic007G003100 Sobic007G003100 Sobic003G167000--Sobic007G003100 Sobic009G218000 Sobic009G218000 Sobic003G167000--Sobic009G218000 Sobic003G274200 Sobic003G274200 Sobic003G167000--Sobic003G274200 Sobic003G167000--Sobic003G113400 Sobic003G190600 Sobic003G190600 Sobic003G167000--Sobic003G190600 Sobic006G153200 Sobic006G153200 Sobic003G167000--Sobic006G153200 Sobic003G130000 Sobic003G130000 Sobic009G041800--Sobic003G130000 Sobic004G212100 Sobic004G212100 Sobic009G041800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic009G041800--Sobic001G011000 Sobic002G367800 Sobic002G367800 Sobic009G041800--Sobic002G367800 Sobic001G167500 Sobic001G167500 Sobic009G041800--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic009G041800--Sobic001G413100 Sobic001G268300 Sobic001G268300 Sobic009G041800--Sobic001G268300 Sobic009G041800--Sobic003G113400 Sobic010G134100 Sobic010G134100 Sobic009G041800--Sobic010G134100 Sobic004G334200--Sobic003G113400 Sobic006G220400 Sobic006G220400 Sobic004G334200--Sobic006G220400 Sobic009G227100 Sobic009G227100 Sobic004G334200--Sobic009G227100 Sobic005G123400 Sobic005G123400 Sobic004G334200--Sobic005G123400 Sobic004G194100 Sobic004G194100 Sobic004G334200--Sobic004G194100 Sobic001G043200 Sobic001G043200 Sobic004G334200--Sobic001G043200 Sobic003G445200 Sobic003G445200 Sobic004G334200--Sobic003G445200 Sobic009G199500 Sobic009G199500 Sobic004G334200--Sobic009G199500 Sobic002G364900 Sobic002G364900 Sobic004G334200--Sobic002G364900 Sobic010G277000 Sobic010G277000 Sobic007G191600--Sobic010G277000 Sobic003G261100 Sobic003G261100 Sobic007G191600--Sobic003G261100 Sobic005G027300 Sobic005G027300 Sobic007G191600--Sobic005G027300 Sobic003G237400 Sobic003G237400 Sobic007G191600--Sobic003G237400 Sobic007G191600--Sobic003G113400 Sobic008G084100 Sobic008G084100 Sobic007G191600--Sobic008G084100 Sobic001G060300 Sobic001G060300 Sobic007G191600--Sobic001G060300 Sobic001G342200 Sobic001G342200 Sobic007G191600--Sobic001G342200 Sobic001G392800 Sobic001G392800 Sobic007G191600--Sobic001G392800 Sobic010G086300 Sobic010G086300 Sobic001G203600--Sobic010G086300 Sobic001G117900 Sobic001G117900 Sobic001G203600--Sobic001G117900 Sobic007G204000 Sobic007G204000 Sobic001G203600--Sobic007G204000 Sobic001G203600--Sobic001G052100 Sobic008G072500 Sobic008G072500 Sobic001G203600--Sobic008G072500 Sobic007G226800 Sobic007G226800 Sobic001G203600--Sobic007G226800 Sobic002G182000 Sobic002G182000 Sobic001G203600--Sobic002G182000 Sobic001G203600--Sobic006G220400 Sobic009G063800 Sobic009G063800 Sobic001G203600--Sobic009G063800 Sobic004G043600--Sobic003G113400 Sobic004G043600--Sobic003G167000 Sobic004G043600--Sobic001G203600 Sobic007G207600 Sobic007G207600 Sobic004G043600--Sobic007G207600 Sobic003G112600 Sobic003G112600 Sobic004G043600--Sobic003G112600 Sobic003G142400 Sobic003G142400 Sobic004G043600--Sobic003G142400 Sobic004G043600--Sobic007G226800 Sobic001G343000 Sobic001G343000 Sobic004G043600--Sobic001G343000 Sobic004G043600--Sobic003G190600 Sobic003G326900 Sobic003G326900 Sobic002G402500--Sobic003G326900 Sobic003G205400 Sobic003G205400 Sobic002G402500--Sobic003G205400 Sobic003G388900 Sobic003G388900 Sobic002G402500--Sobic003G388900 Sobic002G402500--Sobic001G060300 Sobic001G214900 Sobic001G214900 Sobic002G402500--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G402500--Sobic002G367800 Sobic002G402500--Sobic003G113400 Sobic010G250000--Sobic009G063800 Sobic003G194300 Sobic003G194300 Sobic010G250000--Sobic003G194300 Sobic003G023200 Sobic003G023200 Sobic010G250000--Sobic003G023200 Sobic010G250000--Sobic008G072500 Sobic010G192600 Sobic010G192600 Sobic010G250000--Sobic010G192600 Sobic006G041800 Sobic006G041800 Sobic010G250000--Sobic006G041800 Sobic007G148400 Sobic007G148400 Sobic010G250000--Sobic007G148400 Sobic001G286100 Sobic001G286100 Sobic010G250000--Sobic001G286100 Sobic002G276800 Sobic002G276800 Sobic010G250000--Sobic002G276800 Sobic001G052100--Sobic005G123400 Sobic008G039000 Sobic008G039000 Sobic001G052100--Sobic008G039000 Sobic001G052100--Sobic001G203600 Sobic010G112600 Sobic010G112600 Sobic001G052100--Sobic010G112600 Sobic006G237500 Sobic006G237500 Sobic001G052100--Sobic006G237500 Sobic006G262800 Sobic006G262800 Sobic001G052100--Sobic006G262800 Sobic001G052100--Sobic009G227100 Sobic001G478900 Sobic001G478900 Sobic001G052100--Sobic001G478900 Sobic008G095900 Sobic008G095900 Sobic001G052100--Sobic008G095900
Octagon: transcription factors


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