Gene annotation
Transcriptome id Sobic.004G334200.1
Synonym Sb04g036260
Functional annotation ribosomal protein S15 containing protein, expressed
UniProt C5XV31
Pfam PF00312
Panther DB PTHR23321 PTHR23321:SF26
NCBI CDD KOG2815; Mitochondrial/choloroplast ribosomal protein S15
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G15810 : S15/NS1, RNA-binding protein
RAP-DB (Rice) LOC_Os02g55940.1 : ribosomal protein S15 containing protein, expressed
MaizeGDB (Corn) Zm00025a047883 , Zm00025a032898
Brachypodium KQK01200
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G334200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
2 Sobic.006G220400 exonuclease, putative, expressed -
3 Sobic.009G227100 expressed protein -
4 Sobic.005G123400 expressed protein -
5 Sobic.004G194100 expressed protein -
6 Sobic.001G043200 expressed protein -
7 Sobic.003G445200 - -
8 Sobic.009G199500 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
9 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G052100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
11 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
12 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
13 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
14 Sobic.008G039000 expressed protein -
15 Sobic.003G218200 pentatricopeptide containing protein, putative, expressed -
16 Sobic.006G204700 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
17 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.002G342300 exostosin family domain containing protein, expressed -
19 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
20 Sobic.010G112600 integral membrane protein, putative, expressed -


Gene co-expression network
sample Sobic004G334200 Sobic004G334200 Sobic003G113400 Sobic003G113400 Sobic004G334200--Sobic003G113400 Sobic006G220400 Sobic006G220400 Sobic004G334200--Sobic006G220400 Sobic009G227100 Sobic009G227100 Sobic004G334200--Sobic009G227100 Sobic005G123400 Sobic005G123400 Sobic004G334200--Sobic005G123400 Sobic004G194100 Sobic004G194100 Sobic004G334200--Sobic004G194100 Sobic001G043200 Sobic001G043200 Sobic004G334200--Sobic001G043200 Sobic003G445200 Sobic003G445200 Sobic004G334200--Sobic003G445200 Sobic009G199500 Sobic009G199500 Sobic004G334200--Sobic009G199500 Sobic002G364900 Sobic002G364900 Sobic004G334200--Sobic002G364900 Sobic003G167000 Sobic003G167000 Sobic003G113400--Sobic003G167000 Sobic009G041800 Sobic009G041800 Sobic003G113400--Sobic009G041800 Sobic003G113400--Sobic004G334200 Sobic007G191600 Sobic007G191600 Sobic003G113400--Sobic007G191600 Sobic001G203600 Sobic001G203600 Sobic003G113400--Sobic001G203600 Sobic004G043600 Sobic004G043600 Sobic003G113400--Sobic004G043600 Sobic002G402500 Sobic002G402500 Sobic003G113400--Sobic002G402500 Sobic010G250000 Sobic010G250000 Sobic003G113400--Sobic010G250000 Sobic001G052100 Sobic001G052100 Sobic003G113400--Sobic001G052100 Sobic006G220400--Sobic001G043200 Sobic006G220400--Sobic005G123400 Sobic006G220400--Sobic009G227100 Sobic006G012300 Sobic006G012300 Sobic006G220400--Sobic006G012300 Sobic006G220400--Sobic001G203600 Sobic006G103700 Sobic006G103700 Sobic006G220400--Sobic006G103700 Sobic007G204000 Sobic007G204000 Sobic006G220400--Sobic007G204000 Sobic006G220400--Sobic004G194100 Sobic006G220400--Sobic004G334200 Sobic009G227100--Sobic005G123400 Sobic009G227100--Sobic001G043200 Sobic009G227100--Sobic009G199500 Sobic009G227100--Sobic006G220400 Sobic009G252300 Sobic009G252300 Sobic009G227100--Sobic009G252300 Sobic009G227100--Sobic001G052100 Sobic009G227100--Sobic004G334200 Sobic003G190200 Sobic003G190200 Sobic009G227100--Sobic003G190200 Sobic010G112600 Sobic010G112600 Sobic009G227100--Sobic010G112600 Sobic006G237500 Sobic006G237500 Sobic005G123400--Sobic006G237500 Sobic005G123400--Sobic010G112600 Sobic003G393200 Sobic003G393200 Sobic005G123400--Sobic003G393200 Sobic005G123400--Sobic001G043200 Sobic005G123400--Sobic009G227100 Sobic005G123400--Sobic009G252300 Sobic007G030100 Sobic007G030100 Sobic005G123400--Sobic007G030100 Sobic005G123400--Sobic003G190200 Sobic003G368400 Sobic003G368400 Sobic005G123400--Sobic003G368400 Sobic003G113300 Sobic003G113300 Sobic004G194100--Sobic003G113300 Sobic004G194100--Sobic006G220400 Sobic004G194100--Sobic002G364900 Sobic009G154900 Sobic009G154900 Sobic004G194100--Sobic009G154900 Sobic002G399900 Sobic002G399900 Sobic004G194100--Sobic002G399900 Sobic001G051400 Sobic001G051400 Sobic004G194100--Sobic001G051400 Sobic004G194100--Sobic005G123400 Sobic002G386600 Sobic002G386600 Sobic004G194100--Sobic002G386600 Sobic004G194100--Sobic003G393200 Sobic001G043200--Sobic005G123400 Sobic001G043200--Sobic003G190200 Sobic003G021600 Sobic003G021600 Sobic001G043200--Sobic003G021600 Sobic003G394500 Sobic003G394500 Sobic001G043200--Sobic003G394500 Sobic009G122500 Sobic009G122500 Sobic001G043200--Sobic009G122500 Sobic001G043200--Sobic007G030100 Sobic004G122900 Sobic004G122900 Sobic001G043200--Sobic004G122900 Sobic001G043200--Sobic009G154900 Sobic003G194800 Sobic003G194800 Sobic001G043200--Sobic003G194800 Sobic003G445200--Sobic009G199500 Sobic003G445200--Sobic009G227100 Sobic002G398500 Sobic002G398500 Sobic003G445200--Sobic002G398500 Sobic003G445200--Sobic006G103700 Sobic003G445200--Sobic006G220400 Sobic003G445200--Sobic001G043200 Sobic003G445200--Sobic005G123400 Sobic007G158900 Sobic007G158900 Sobic003G445200--Sobic007G158900 Sobic003G445200--Sobic003G113400 Sobic009G199500--Sobic007G158900 Sobic009G199500--Sobic009G227100 Sobic009G199500--Sobic003G445200 Sobic002G299100 Sobic002G299100 Sobic009G199500--Sobic002G299100 Sobic002G131400 Sobic002G131400 Sobic009G199500--Sobic002G131400 Sobic009G199500--Sobic004G122900 Sobic004G084400 Sobic004G084400 Sobic009G199500--Sobic004G084400 Sobic009G199500--Sobic001G043200 Sobic009G199500--Sobic002G398500 Sobic003G304400 Sobic003G304400 Sobic002G364900--Sobic003G304400 Sobic010G192600 Sobic010G192600 Sobic002G364900--Sobic010G192600 Sobic006G265600 Sobic006G265600 Sobic002G364900--Sobic006G265600 Sobic001G015400 Sobic001G015400 Sobic002G364900--Sobic001G015400 Sobic002G227500 Sobic002G227500 Sobic002G364900--Sobic002G227500 Sobic006G106300 Sobic006G106300 Sobic002G364900--Sobic006G106300 Sobic001G099900 Sobic001G099900 Sobic002G364900--Sobic001G099900 Sobic001G085800 Sobic001G085800 Sobic002G364900--Sobic001G085800 Sobic001G474400 Sobic001G474400 Sobic002G364900--Sobic001G474400
Octagon: transcription factors


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