Gene annotation
Transcriptome id Sobic.006G204700.1
Synonym Sb06g027580
Functional annotation oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
UniProt C5YF73
Pfam PF13893 PF13532
Panther DB PTHR13069 PTHR13069:SF8
NCBI CDD KOG4176; Uncharacterized conserved protein
KEGG Orthology K10770; ALKBH8, alkylated DNA repair protein alkB homolog 8
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G31600 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g51360.1 : oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a009921
Brachypodium KQJ84428
Barley -
Wheat TraesCS2B02G456500 , TraesCS2D02G433200 , TraesCS2A02G436700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
2 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
3 Sobic.006G198400 phosphoenolpyruvate carboxykinase, putative, expressed -
4 Sobic.006G191000 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
5 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
6 Sobic.003G305900 expressed protein -
7 Sobic.006G112500 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
8 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
9 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
10 Sobic.004G025700 PPR repeat domain containing protein, putative, expressed -
11 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
12 Sobic.002G395500 ATP12 ATPase, putative, expressed K07556: ATPeAF2, ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
13 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.001G498800 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
15 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
16 Sobic.010G112600 integral membrane protein, putative, expressed -
17 Sobic.006G220400 exonuclease, putative, expressed -
18 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
19 Sobic.001G043200 expressed protein -
20 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase


Gene co-expression network
sample Sobic006G204700 Sobic006G204700 Sobic003G394500 Sobic003G394500 Sobic006G204700--Sobic003G394500 Sobic003G021600 Sobic003G021600 Sobic006G204700--Sobic003G021600 Sobic006G198400 Sobic006G198400 Sobic006G204700--Sobic006G198400 Sobic006G191000 Sobic006G191000 Sobic006G204700--Sobic006G191000 Sobic010G086300 Sobic010G086300 Sobic006G204700--Sobic010G086300 Sobic003G305900 Sobic003G305900 Sobic006G204700--Sobic003G305900 Sobic006G112500 Sobic006G112500 Sobic006G204700--Sobic006G112500 Sobic007G218600 Sobic007G218600 Sobic006G204700--Sobic007G218600 Sobic001G114200 Sobic001G114200 Sobic006G204700--Sobic001G114200 Sobic003G117800 Sobic003G117800 Sobic003G394500--Sobic003G117800 Sobic001G385000 Sobic001G385000 Sobic003G394500--Sobic001G385000 Sobic004G350700 Sobic004G350700 Sobic003G394500--Sobic004G350700 Sobic001G378800 Sobic001G378800 Sobic003G394500--Sobic001G378800 Sobic007G118500 Sobic007G118500 Sobic003G394500--Sobic007G118500 Sobic003G190200 Sobic003G190200 Sobic003G394500--Sobic003G190200 Sobic006G232800 Sobic006G232800 Sobic003G394500--Sobic006G232800 Sobic007G030100 Sobic007G030100 Sobic003G394500--Sobic007G030100 Sobic001G424800 Sobic001G424800 Sobic003G394500--Sobic001G424800 Sobic009G194000 Sobic009G194000 Sobic003G021600--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic003G021600--Sobic003G181700 Sobic003G021600--Sobic003G190200 Sobic002G227500 Sobic002G227500 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G021600--Sobic003G394500 Sobic001G308400 Sobic001G308400 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200 Sobic003G297700 Sobic003G297700 Sobic006G198400--Sobic003G297700 Sobic006G198400--Sobic003G021600 Sobic001G497600 Sobic001G497600 Sobic006G198400--Sobic001G497600 Sobic005G087300 Sobic005G087300 Sobic006G198400--Sobic005G087300 Sobic003G393200 Sobic003G393200 Sobic006G198400--Sobic003G393200 Sobic006G198400--Sobic009G194000 Sobic006G198400--Sobic009G040250 Sobic002G147200 Sobic002G147200 Sobic006G198400--Sobic002G147200 Sobic007G153500 Sobic007G153500 Sobic006G198400--Sobic007G153500 Sobic006G191000--Sobic010G086300 Sobic001G149000 Sobic001G149000 Sobic006G191000--Sobic001G149000 Sobic006G191000--Sobic003G394500 Sobic008G152700 Sobic008G152700 Sobic006G191000--Sobic008G152700 Sobic004G194400 Sobic004G194400 Sobic006G191000--Sobic004G194400 Sobic006G191000--Sobic006G232800 Sobic009G046900 Sobic009G046900 Sobic006G191000--Sobic009G046900 Sobic010G274800 Sobic010G274800 Sobic006G191000--Sobic010G274800 Sobic002G304700 Sobic002G304700 Sobic006G191000--Sobic002G304700 Sobic010G086300--Sobic001G385000 Sobic010G086300--Sobic006G232800 Sobic010G086300--Sobic003G394500 Sobic010G086300--Sobic001G149000 Sobic008G022400 Sobic008G022400 Sobic010G086300--Sobic008G022400 Sobic009G025700 Sobic009G025700 Sobic010G086300--Sobic009G025700 Sobic002G362500 Sobic002G362500 Sobic010G086300--Sobic002G362500 Sobic010G086300--Sobic006G191000 Sobic010G086300--Sobic009G046900 Sobic003G160500 Sobic003G160500 Sobic003G305900--Sobic003G160500 Sobic002G023100 Sobic002G023100 Sobic003G305900--Sobic002G023100 Sobic001G277300 Sobic001G277300 Sobic003G305900--Sobic001G277300 Sobic003G305900--Sobic001G385000 Sobic010G181600 Sobic010G181600 Sobic003G305900--Sobic010G181600 Sobic003G022000 Sobic003G022000 Sobic003G305900--Sobic003G022000 Sobic002G397900 Sobic002G397900 Sobic003G305900--Sobic002G397900 Sobic003G305900--Sobic003G117800 Sobic010G160300 Sobic010G160300 Sobic003G305900--Sobic010G160300 Sobic006G112500--Sobic006G232800 Sobic006G112500--Sobic006G191000 Sobic006G112500--Sobic003G394500 Sobic006G112500--Sobic010G086300 Sobic001G356100 Sobic001G356100 Sobic006G112500--Sobic001G356100 Sobic006G112500--Sobic003G117800 Sobic006G112500--Sobic002G304700 Sobic006G112500--Sobic009G046900 Sobic006G112500--Sobic003G021600 Sobic009G186700 Sobic009G186700 Sobic007G218600--Sobic009G186700 Sobic001G305900 Sobic001G305900 Sobic007G218600--Sobic001G305900 Sobic007G148400 Sobic007G148400 Sobic007G218600--Sobic007G148400 Sobic003G255700 Sobic003G255700 Sobic007G218600--Sobic003G255700 Sobic001G280500 Sobic001G280500 Sobic007G218600--Sobic001G280500 Sobic003G308300 Sobic003G308300 Sobic007G218600--Sobic003G308300 Sobic007G218600--Sobic001G114200 Sobic007G218600--Sobic010G181600 Sobic007G218600--Sobic010G160300 Sobic001G114200--Sobic004G350700 Sobic006G060000 Sobic006G060000 Sobic001G114200--Sobic006G060000 Sobic001G114200--Sobic010G160300 Sobic001G114200--Sobic003G117800 Sobic001G114200--Sobic003G394500 Sobic006G210700 Sobic006G210700 Sobic001G114200--Sobic006G210700 Sobic001G490900 Sobic001G490900 Sobic001G114200--Sobic001G490900 Sobic001G114200--Sobic007G030100 Sobic001G114200--Sobic007G218600
Octagon: transcription factors


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