Gene annotation
Transcriptome id Sobic.006G191000.2
Synonym Sb06g026430
Functional annotation tRNA-splicing endonuclease positive effector-related, putative, expressed
UniProt A0A1Z5REN3
Pfam PF13245 PF13087
Panther DB PTHR10887 PTHR10887:SF373
NCBI CDD KOG1801; tRNA-splicing endonuclease positive effector (SEN1)
KEGG Orthology K10706; SETX, senataxin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37150 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g49310.1 : tRNA-splicing endonuclease positive effector-related, putative, expressed
MaizeGDB (Corn) Zm00025a056682 , Zm00025a038358 , Zm00025a010073 , Zm00025a010072
Brachypodium -
Barley HORVU2Hr1G093840.4 , HORVU2Hr1G093840.5 , HORVU2Hr1G093840.6 , HORVU2Hr1G093840.1 , HORVU2Hr1G093840.2
Wheat TraesCS2D02G392100 , TraesCS2A02G394300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
2 Sobic.001G149000 FAR1 family protein, expressed -
3 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
4 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
5 Sobic.004G194400 expressed protein -
6 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin
7 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
8 Sobic.010G274800 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
9 Sobic.002G304700 RFT1, putative, expressed K06316: oligosaccharide translocation protein RFT1
10 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
11 Sobic.009G156800 expressed protein -
12 Sobic.006G112500 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
13 Sobic.008G022400 EMB2748, putative, expressed -
14 Sobic.004G350700 kelch repeat protein, putative, expressed -
15 Sobic.002G213900 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
16 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
17 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
18 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
19 Sobic.003G004800 ATP binding protein, putative, expressed -
20 Sobic.006G071362 - K02021: putative ABC transport system ATP-binding protein


Gene co-expression network
sample Sobic006G191000 Sobic006G191000 Sobic010G086300 Sobic010G086300 Sobic006G191000--Sobic010G086300 Sobic001G149000 Sobic001G149000 Sobic006G191000--Sobic001G149000 Sobic003G394500 Sobic003G394500 Sobic006G191000--Sobic003G394500 Sobic008G152700 Sobic008G152700 Sobic006G191000--Sobic008G152700 Sobic004G194400 Sobic004G194400 Sobic006G191000--Sobic004G194400 Sobic006G232800 Sobic006G232800 Sobic006G191000--Sobic006G232800 Sobic009G046900 Sobic009G046900 Sobic006G191000--Sobic009G046900 Sobic010G274800 Sobic010G274800 Sobic006G191000--Sobic010G274800 Sobic002G304700 Sobic002G304700 Sobic006G191000--Sobic002G304700 Sobic001G385000 Sobic001G385000 Sobic010G086300--Sobic001G385000 Sobic010G086300--Sobic006G232800 Sobic010G086300--Sobic003G394500 Sobic010G086300--Sobic001G149000 Sobic008G022400 Sobic008G022400 Sobic010G086300--Sobic008G022400 Sobic009G025700 Sobic009G025700 Sobic010G086300--Sobic009G025700 Sobic002G362500 Sobic002G362500 Sobic010G086300--Sobic002G362500 Sobic010G086300--Sobic006G191000 Sobic010G086300--Sobic009G046900 Sobic004G077300 Sobic004G077300 Sobic001G149000--Sobic004G077300 Sobic001G149000--Sobic008G152700 Sobic003G385300 Sobic003G385300 Sobic001G149000--Sobic003G385300 Sobic001G149000--Sobic009G046900 Sobic001G384200 Sobic001G384200 Sobic001G149000--Sobic001G384200 Sobic009G178400 Sobic009G178400 Sobic001G149000--Sobic009G178400 Sobic001G280500 Sobic001G280500 Sobic001G149000--Sobic001G280500 Sobic008G166100 Sobic008G166100 Sobic001G149000--Sobic008G166100 Sobic001G387300 Sobic001G387300 Sobic001G149000--Sobic001G387300 Sobic003G117800 Sobic003G117800 Sobic003G394500--Sobic003G117800 Sobic003G394500--Sobic001G385000 Sobic004G350700 Sobic004G350700 Sobic003G394500--Sobic004G350700 Sobic001G378800 Sobic001G378800 Sobic003G394500--Sobic001G378800 Sobic007G118500 Sobic007G118500 Sobic003G394500--Sobic007G118500 Sobic003G190200 Sobic003G190200 Sobic003G394500--Sobic003G190200 Sobic003G394500--Sobic006G232800 Sobic007G030100 Sobic007G030100 Sobic003G394500--Sobic007G030100 Sobic001G424800 Sobic001G424800 Sobic003G394500--Sobic001G424800 Sobic008G152700--Sobic001G149000 Sobic008G152700--Sobic003G385300 Sobic008G152700--Sobic003G117800 Sobic008G152700--Sobic004G077300 Sobic008G152700--Sobic009G046900 Sobic007G172700 Sobic007G172700 Sobic008G152700--Sobic007G172700 Sobic003G428000 Sobic003G428000 Sobic008G152700--Sobic003G428000 Sobic008G152700--Sobic003G394500 Sobic008G152700--Sobic001G385000 Sobic006G071362 Sobic006G071362 Sobic004G194400--Sobic006G071362 Sobic006G134500 Sobic006G134500 Sobic004G194400--Sobic006G134500 Sobic006G265800 Sobic006G265800 Sobic004G194400--Sobic006G265800 Sobic004G194400--Sobic003G428000 Sobic010G277700 Sobic010G277700 Sobic004G194400--Sobic010G277700 Sobic001G308500 Sobic001G308500 Sobic004G194400--Sobic001G308500 Sobic004G194400--Sobic001G149000 Sobic004G194400--Sobic003G385300 Sobic004G194400--Sobic010G274800 Sobic006G232800--Sobic001G378800 Sobic006G232800--Sobic001G385000 Sobic006G232800--Sobic003G394500 Sobic006G232800--Sobic001G149000 Sobic006G232800--Sobic010G086300 Sobic006G232800--Sobic001G280500 Sobic002G313100 Sobic002G313100 Sobic006G232800--Sobic002G313100 Sobic002G392400 Sobic002G392400 Sobic006G232800--Sobic002G392400 Sobic006G232800--Sobic006G265800 Sobic009G046900--Sobic001G149000 Sobic009G046900--Sobic009G178400 Sobic002G233600 Sobic002G233600 Sobic009G046900--Sobic002G233600 Sobic009G046900--Sobic006G134500 Sobic002G074800 Sobic002G074800 Sobic009G046900--Sobic002G074800 Sobic009G046900--Sobic003G385300 Sobic009G046900--Sobic001G384200 Sobic006G193400 Sobic006G193400 Sobic009G046900--Sobic006G193400 Sobic003G358600 Sobic003G358600 Sobic009G046900--Sobic003G358600 Sobic010G274800--Sobic001G308500 Sobic010G274800--Sobic009G046900 Sobic010G274800--Sobic001G149000 Sobic010G274800--Sobic003G428000 Sobic010G274800--Sobic004G194400 Sobic010G274800--Sobic006G265800 Sobic010G274800--Sobic006G071362 Sobic010G274800--Sobic010G086300 Sobic010G274800--Sobic006G134500 Sobic010G160300 Sobic010G160300 Sobic002G304700--Sobic010G160300 Sobic006G156400 Sobic006G156400 Sobic002G304700--Sobic006G156400 Sobic002G304700--Sobic001G280500 Sobic002G304700--Sobic003G385300 Sobic002G304700--Sobic001G149000 Sobic002G304700--Sobic004G077300 Sobic002G007800 Sobic002G007800 Sobic002G304700--Sobic002G007800 Sobic009G106700 Sobic009G106700 Sobic002G304700--Sobic009G106700 Sobic005G063200 Sobic005G063200 Sobic002G304700--Sobic005G063200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.