Gene annotation
Transcriptome id Sobic.006G112500.3,Sobic.006G112500.2,Sobic.006G112500.1
Synonym AHG2, ATPARN, Sb06g019420
Functional annotation CAF1 family ribonuclease containing protein, putative, expressed
UniProt A0A1Z5REC8 , C5YA90 , A0A1Z5RE70
Pfam PF04857
Panther DB PTHR15092 PTHR15092:SF22
NCBI CDD KOG1990; Poly(A)-specific exoribonuclease PARN
KEGG Orthology K01148; PARN, poly(A)-specific ribonuclease
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G55870 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os04g39260.3,LOC_Os04g39260.1 : CAF1 family ribonuclease containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a056258
Brachypodium KQJ83061
Barley HORVU2Hr1G081440.8 , HORVU2Hr1G081440.7 , HORVU2Hr1G081440.6 , HORVU2Hr1G081440.5 , HORVU2Hr1G081440.4 , HORVU2Hr1G081440.3 , HORVU2Hr1G081440.2 , HORVU2Hr1G081440.1 , HORVU2Hr1G081440.9 , HORVU2Hr1G081440.13 , HORVU2Hr1G081440.12 , HORVU2Hr1G081440.11 , HORVU2Hr1G081440.10
Wheat TraesCS2B02G348400 , TraesCS2B02G348400 , TraesCS2D02G329400 , TraesCS2A02G335100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin
2 Sobic.006G191000 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
3 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
4 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
5 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
6 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
7 Sobic.002G304700 RFT1, putative, expressed K06316: oligosaccharide translocation protein RFT1
8 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
9 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
10 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
11 Sobic.009G040250 - -
12 Sobic.004G350700 kelch repeat protein, putative, expressed -
13 Sobic.003G432800 CRS1/YhbY domain containing protein, putative, expressed -
14 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
15 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
16 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
17 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
18 Sobic.001G149000 FAR1 family protein, expressed -
19 Sobic.008G022400 EMB2748, putative, expressed -
20 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase


Gene co-expression network
sample Sobic006G112500 Sobic006G112500 Sobic006G232800 Sobic006G232800 Sobic006G112500--Sobic006G232800 Sobic006G191000 Sobic006G191000 Sobic006G112500--Sobic006G191000 Sobic003G394500 Sobic003G394500 Sobic006G112500--Sobic003G394500 Sobic010G086300 Sobic010G086300 Sobic006G112500--Sobic010G086300 Sobic001G356100 Sobic001G356100 Sobic006G112500--Sobic001G356100 Sobic003G117800 Sobic003G117800 Sobic006G112500--Sobic003G117800 Sobic002G304700 Sobic002G304700 Sobic006G112500--Sobic002G304700 Sobic009G046900 Sobic009G046900 Sobic006G112500--Sobic009G046900 Sobic003G021600 Sobic003G021600 Sobic006G112500--Sobic003G021600 Sobic001G378800 Sobic001G378800 Sobic006G232800--Sobic001G378800 Sobic001G385000 Sobic001G385000 Sobic006G232800--Sobic001G385000 Sobic006G232800--Sobic003G394500 Sobic001G149000 Sobic001G149000 Sobic006G232800--Sobic001G149000 Sobic006G232800--Sobic010G086300 Sobic001G280500 Sobic001G280500 Sobic006G232800--Sobic001G280500 Sobic002G313100 Sobic002G313100 Sobic006G232800--Sobic002G313100 Sobic002G392400 Sobic002G392400 Sobic006G232800--Sobic002G392400 Sobic006G265800 Sobic006G265800 Sobic006G232800--Sobic006G265800 Sobic006G191000--Sobic010G086300 Sobic006G191000--Sobic001G149000 Sobic006G191000--Sobic003G394500 Sobic008G152700 Sobic008G152700 Sobic006G191000--Sobic008G152700 Sobic004G194400 Sobic004G194400 Sobic006G191000--Sobic004G194400 Sobic006G191000--Sobic006G232800 Sobic006G191000--Sobic009G046900 Sobic010G274800 Sobic010G274800 Sobic006G191000--Sobic010G274800 Sobic006G191000--Sobic002G304700 Sobic003G394500--Sobic003G117800 Sobic003G394500--Sobic001G385000 Sobic004G350700 Sobic004G350700 Sobic003G394500--Sobic004G350700 Sobic003G394500--Sobic001G378800 Sobic007G118500 Sobic007G118500 Sobic003G394500--Sobic007G118500 Sobic003G190200 Sobic003G190200 Sobic003G394500--Sobic003G190200 Sobic003G394500--Sobic006G232800 Sobic007G030100 Sobic007G030100 Sobic003G394500--Sobic007G030100 Sobic001G424800 Sobic001G424800 Sobic003G394500--Sobic001G424800 Sobic010G086300--Sobic001G385000 Sobic010G086300--Sobic006G232800 Sobic010G086300--Sobic003G394500 Sobic010G086300--Sobic001G149000 Sobic008G022400 Sobic008G022400 Sobic010G086300--Sobic008G022400 Sobic009G025700 Sobic009G025700 Sobic010G086300--Sobic009G025700 Sobic002G362500 Sobic002G362500 Sobic010G086300--Sobic002G362500 Sobic010G086300--Sobic006G191000 Sobic010G086300--Sobic009G046900 Sobic004G263500 Sobic004G263500 Sobic001G356100--Sobic004G263500 Sobic001G356100--Sobic007G118500 Sobic001G356100--Sobic003G394500 Sobic001G455000 Sobic001G455000 Sobic001G356100--Sobic001G455000 Sobic001G356100--Sobic006G232800 Sobic006G060000 Sobic006G060000 Sobic001G356100--Sobic006G060000 Sobic001G356100--Sobic004G350700 Sobic001G114200 Sobic001G114200 Sobic001G356100--Sobic001G114200 Sobic010G133400 Sobic010G133400 Sobic001G356100--Sobic010G133400 Sobic003G117800--Sobic001G424800 Sobic003G385300 Sobic003G385300 Sobic003G117800--Sobic003G385300 Sobic003G117800--Sobic003G394500 Sobic001G057400 Sobic001G057400 Sobic003G117800--Sobic001G057400 Sobic003G117800--Sobic008G152700 Sobic003G117800--Sobic001G149000 Sobic001G356200 Sobic001G356200 Sobic003G117800--Sobic001G356200 Sobic003G117800--Sobic001G385000 Sobic003G117800--Sobic009G046900 Sobic010G160300 Sobic010G160300 Sobic002G304700--Sobic010G160300 Sobic006G156400 Sobic006G156400 Sobic002G304700--Sobic006G156400 Sobic002G304700--Sobic001G280500 Sobic002G304700--Sobic003G385300 Sobic002G304700--Sobic001G149000 Sobic004G077300 Sobic004G077300 Sobic002G304700--Sobic004G077300 Sobic002G007800 Sobic002G007800 Sobic002G304700--Sobic002G007800 Sobic009G106700 Sobic009G106700 Sobic002G304700--Sobic009G106700 Sobic005G063200 Sobic005G063200 Sobic002G304700--Sobic005G063200 Sobic009G046900--Sobic001G149000 Sobic009G178400 Sobic009G178400 Sobic009G046900--Sobic009G178400 Sobic002G233600 Sobic002G233600 Sobic009G046900--Sobic002G233600 Sobic006G134500 Sobic006G134500 Sobic009G046900--Sobic006G134500 Sobic002G074800 Sobic002G074800 Sobic009G046900--Sobic002G074800 Sobic009G046900--Sobic003G385300 Sobic001G384200 Sobic001G384200 Sobic009G046900--Sobic001G384200 Sobic006G193400 Sobic006G193400 Sobic009G046900--Sobic006G193400 Sobic003G358600 Sobic003G358600 Sobic009G046900--Sobic003G358600 Sobic009G194000 Sobic009G194000 Sobic003G021600--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic003G021600--Sobic003G181700 Sobic003G021600--Sobic003G190200 Sobic002G227500 Sobic002G227500 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G021600--Sobic003G394500 Sobic001G308400 Sobic001G308400 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200
Octagon: transcription factors


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