Gene annotation
Transcriptome id Sobic.003G432800.1
Synonym Sb03g046420
Functional annotation CRS1/YhbY domain containing protein, putative, expressed
UniProt C5XIK2
Pfam PF01985
Panther DB PTHR31426 PTHR31426:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G28480 : RNA-binding CRS1 / YhbY (CRM) domain protein
RAP-DB (Rice) LOC_Os01g72820.3 : CRS1/YhbY domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a025914 , Zm00025a025919
Brachypodium KQK11633
Barley HORVU3Hr1G110360.10 , HORVU3Hr1G110360.11 , HORVU3Hr1G110360.12 , HORVU3Hr1G110360.13 , HORVU3Hr1G110360.14 , HORVU3Hr1G110360.15 , HORVU3Hr1G110360.16 , HORVU3Hr1G110360.17 , HORVU3Hr1G110360.18 , HORVU3Hr1G110360.19 , HORVU3Hr1G110360.2 , HORVU3Hr1G110360.3 , HORVU3Hr1G110360.1 , HORVU3Hr1G110360.6 , HORVU3Hr1G110360.7 , HORVU3Hr1G110360.4 , HORVU3Hr1G110360.5 , HORVU3Hr1G110360.8 , HORVU3Hr1G110360.9
Wheat TraesCS3B02G562100 , TraesCS3B02G562100 , TraesCS3D02G505800 , TraesCS3A02G499000 , TraesCS3A02G499000 , TraesCS3A02G499000
Populus -


JBrowse

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cDNA sequences
Sobic.003G432800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase
2 Sobic.003G010900 expressed protein -
3 Sobic.006G112500 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
4 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
5 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
6 Sobic.002G381900 expressed protein -
7 Sobic.002G342300 exostosin family domain containing protein, expressed -
8 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
9 Sobic.003G113300 expressed protein -
10 Sobic.004G020100 division protein, putative, expressed -
11 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
12 Sobic.003G393200 expressed protein -
13 Sobic.004G084400 methyltransferase domain containing protein, expressed K14850: ribosomal RNA-processing protein 8
14 Sobic.001G229300 expressed protein -
15 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
16 Sobic.003G299500 expressed protein -
17 Sobic.006G220400 exonuclease, putative, expressed -
18 Sobic.001G043200 expressed protein -
19 Sobic.005G123400 expressed protein -
20 Sobic.007G153500 metal cation transporter, putative, expressed K14713: SLC39A7, KE4, solute carrier family 39 (zinc transporter), member 7


Gene co-expression network
sample Sobic003G432800 Sobic003G432800 Sobic002G076500 Sobic002G076500 Sobic003G432800--Sobic002G076500 Sobic003G010900 Sobic003G010900 Sobic003G432800--Sobic003G010900 Sobic006G112500 Sobic006G112500 Sobic003G432800--Sobic006G112500 Sobic001G051400 Sobic001G051400 Sobic003G432800--Sobic001G051400 Sobic006G191200 Sobic006G191200 Sobic003G432800--Sobic006G191200 Sobic002G381900 Sobic002G381900 Sobic003G432800--Sobic002G381900 Sobic002G342300 Sobic002G342300 Sobic003G432800--Sobic002G342300 Sobic001G123600 Sobic001G123600 Sobic003G432800--Sobic001G123600 Sobic003G113300 Sobic003G113300 Sobic003G432800--Sobic003G113300 Sobic007G153500 Sobic007G153500 Sobic002G076500--Sobic007G153500 Sobic008G116700 Sobic008G116700 Sobic002G076500--Sobic008G116700 Sobic002G076500--Sobic003G432800 Sobic002G322400 Sobic002G322400 Sobic002G076500--Sobic002G322400 Sobic006G210700 Sobic006G210700 Sobic002G076500--Sobic006G210700 Sobic008G019532 Sobic008G019532 Sobic002G076500--Sobic008G019532 Sobic005G087300 Sobic005G087300 Sobic002G076500--Sobic005G087300 Sobic004G172500 Sobic004G172500 Sobic002G076500--Sobic004G172500 Sobic002G076500--Sobic001G051400 Sobic003G010900--Sobic001G051400 Sobic004G145600 Sobic004G145600 Sobic003G010900--Sobic004G145600 Sobic002G066800 Sobic002G066800 Sobic003G010900--Sobic002G066800 Sobic007G016900 Sobic007G016900 Sobic003G010900--Sobic007G016900 Sobic003G010900--Sobic001G123600 Sobic004G084400 Sobic004G084400 Sobic003G010900--Sobic004G084400 Sobic001G229300 Sobic001G229300 Sobic003G010900--Sobic001G229300 Sobic003G010900--Sobic003G432800 Sobic003G010900--Sobic002G381900 Sobic006G232800 Sobic006G232800 Sobic006G112500--Sobic006G232800 Sobic006G191000 Sobic006G191000 Sobic006G112500--Sobic006G191000 Sobic003G394500 Sobic003G394500 Sobic006G112500--Sobic003G394500 Sobic010G086300 Sobic010G086300 Sobic006G112500--Sobic010G086300 Sobic001G356100 Sobic001G356100 Sobic006G112500--Sobic001G356100 Sobic003G117800 Sobic003G117800 Sobic006G112500--Sobic003G117800 Sobic002G304700 Sobic002G304700 Sobic006G112500--Sobic002G304700 Sobic009G046900 Sobic009G046900 Sobic006G112500--Sobic009G046900 Sobic003G021600 Sobic003G021600 Sobic006G112500--Sobic003G021600 Sobic001G051400--Sobic002G066800 Sobic007G034200 Sobic007G034200 Sobic001G051400--Sobic007G034200 Sobic003G393200 Sobic003G393200 Sobic001G051400--Sobic003G393200 Sobic001G051400--Sobic003G010900 Sobic009G120400 Sobic009G120400 Sobic001G051400--Sobic009G120400 Sobic001G051400--Sobic006G191200 Sobic001G051400--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic001G051400--Sobic002G078100 Sobic005G123400 Sobic005G123400 Sobic001G051400--Sobic005G123400 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic006G191200--Sobic001G051400 Sobic006G191200--Sobic002G078100 Sobic006G191200--Sobic002G066800 Sobic003G299500 Sobic003G299500 Sobic006G191200--Sobic003G299500 Sobic002G386900 Sobic002G386900 Sobic006G191200--Sobic002G386900 Sobic006G191200--Sobic009G120400 Sobic004G097900 Sobic004G097900 Sobic006G191200--Sobic004G097900 Sobic002G381900--Sobic004G084400 Sobic001G308400 Sobic001G308400 Sobic002G381900--Sobic001G308400 Sobic002G381900--Sobic003G010900 Sobic003G256800 Sobic003G256800 Sobic002G381900--Sobic003G256800 Sobic002G381900--Sobic006G191200 Sobic005G114500 Sobic005G114500 Sobic002G381900--Sobic005G114500 Sobic009G254100 Sobic009G254100 Sobic002G381900--Sobic009G254100 Sobic002G381900--Sobic003G299500 Sobic004G031300 Sobic004G031300 Sobic002G381900--Sobic004G031300 Sobic002G342300--Sobic005G123400 Sobic006G237500 Sobic006G237500 Sobic002G342300--Sobic006G237500 Sobic002G342300--Sobic003G432800 Sobic005G216800 Sobic005G216800 Sobic002G342300--Sobic005G216800 Sobic001G043200 Sobic001G043200 Sobic002G342300--Sobic001G043200 Sobic002G342300--Sobic003G113300 Sobic002G342300--Sobic006G112500 Sobic002G342300--Sobic001G051400 Sobic002G342300--Sobic003G393200 Sobic001G123600--Sobic006G191200 Sobic001G123600--Sobic001G229300 Sobic003G360300 Sobic003G360300 Sobic001G123600--Sobic003G360300 Sobic001G123600--Sobic007G034200 Sobic001G123600--Sobic002G386900 Sobic010G269300 Sobic010G269300 Sobic001G123600--Sobic010G269300 Sobic001G123600--Sobic009G120400 Sobic001G123600--Sobic003G299500 Sobic001G123600--Sobic003G010900 Sobic009G122500 Sobic009G122500 Sobic003G113300--Sobic009G122500 Sobic003G113300--Sobic002G296400 Sobic002G014800 Sobic002G014800 Sobic003G113300--Sobic002G014800 Sobic001G474400 Sobic001G474400 Sobic003G113300--Sobic001G474400 Sobic001G030000 Sobic001G030000 Sobic003G113300--Sobic001G030000 Sobic003G113300--Sobic005G114500 Sobic007G030100 Sobic007G030100 Sobic003G113300--Sobic007G030100 Sobic003G113300--Sobic003G393200 Sobic003G113300--Sobic001G051400
Octagon: transcription factors


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