Gene annotation
Transcriptome id Sobic.004G084400.1
Synonym Sb04g006950
Functional annotation methyltransferase domain containing protein, expressed
UniProt C5XXL6
Pfam PF08241
Panther DB PTHR12787 PTHR12787:SF0
NCBI CDD KOG3045; Predicted RNA methylase involved in rRNA processing
KEGG Orthology K14850; ribosomal RNA-processing protein 8
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G40530 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os02g38060.1 : methyltransferase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034618
Brachypodium KQK00144 , KQK00145
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G084400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G381900 expressed protein -
2 Sobic.003G010900 expressed protein -
3 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
4 Sobic.009G059400 expressed protein -
5 Sobic.009G199500 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
6 Sobic.004G145600 expressed protein -
7 Sobic.003G113300 expressed protein -
8 Sobic.007G016900 OsFBL26 - F-box domain and LRR containing protein, expressed -
9 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
10 Sobic.001G340300 tentative name(PubMedID : 31536532)@expressed protein -
11 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
12 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
13 Sobic.004G084500 GPI-anchor transamidase precursor, putative, expressed K05290: GPI-anchor transamidase subunit K
14 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
15 Sobic.003G432800 CRS1/YhbY domain containing protein, putative, expressed -
16 Sobic.003G393200 expressed protein -
17 Sobic.005G178950 - -
18 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
19 Sobic.009G122500 expressed protein -
20 Sobic.004G060300 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic004G084400 Sobic004G084400 Sobic002G381900 Sobic002G381900 Sobic004G084400--Sobic002G381900 Sobic003G010900 Sobic003G010900 Sobic004G084400--Sobic003G010900 Sobic004G345400 Sobic004G345400 Sobic004G084400--Sobic004G345400 Sobic009G059400 Sobic009G059400 Sobic004G084400--Sobic009G059400 Sobic009G199500 Sobic009G199500 Sobic004G084400--Sobic009G199500 Sobic004G145600 Sobic004G145600 Sobic004G084400--Sobic004G145600 Sobic003G113300 Sobic003G113300 Sobic004G084400--Sobic003G113300 Sobic007G016900 Sobic007G016900 Sobic004G084400--Sobic007G016900 Sobic003G222700 Sobic003G222700 Sobic004G084400--Sobic003G222700 Sobic002G381900--Sobic004G084400 Sobic001G308400 Sobic001G308400 Sobic002G381900--Sobic001G308400 Sobic002G381900--Sobic003G010900 Sobic003G256800 Sobic003G256800 Sobic002G381900--Sobic003G256800 Sobic006G191200 Sobic006G191200 Sobic002G381900--Sobic006G191200 Sobic005G114500 Sobic005G114500 Sobic002G381900--Sobic005G114500 Sobic009G254100 Sobic009G254100 Sobic002G381900--Sobic009G254100 Sobic003G299500 Sobic003G299500 Sobic002G381900--Sobic003G299500 Sobic004G031300 Sobic004G031300 Sobic002G381900--Sobic004G031300 Sobic001G051400 Sobic001G051400 Sobic003G010900--Sobic001G051400 Sobic003G010900--Sobic004G145600 Sobic002G066800 Sobic002G066800 Sobic003G010900--Sobic002G066800 Sobic003G010900--Sobic007G016900 Sobic001G123600 Sobic001G123600 Sobic003G010900--Sobic001G123600 Sobic003G010900--Sobic004G084400 Sobic001G229300 Sobic001G229300 Sobic003G010900--Sobic001G229300 Sobic003G432800 Sobic003G432800 Sobic003G010900--Sobic003G432800 Sobic003G010900--Sobic002G381900 Sobic001G042200 Sobic001G042200 Sobic004G345400--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic004G345400--Sobic010G077500 Sobic009G249700 Sobic009G249700 Sobic004G345400--Sobic009G249700 Sobic007G042900 Sobic007G042900 Sobic004G345400--Sobic007G042900 Sobic004G180900 Sobic004G180900 Sobic004G345400--Sobic004G180900 Sobic006G186400 Sobic006G186400 Sobic004G345400--Sobic006G186400 Sobic004G084500 Sobic004G084500 Sobic004G345400--Sobic004G084500 Sobic007G056500 Sobic007G056500 Sobic004G345400--Sobic007G056500 Sobic003G394200 Sobic003G394200 Sobic004G345400--Sobic003G394200 Sobic009G017200 Sobic009G017200 Sobic009G059400--Sobic009G017200 Sobic005G198200 Sobic005G198200 Sobic009G059400--Sobic005G198200 Sobic007G218600 Sobic007G218600 Sobic009G059400--Sobic007G218600 Sobic006G144000 Sobic006G144000 Sobic009G059400--Sobic006G144000 Sobic003G393200 Sobic003G393200 Sobic009G059400--Sobic003G393200 Sobic009G125000 Sobic009G125000 Sobic009G059400--Sobic009G125000 Sobic009G059400--Sobic004G345400 Sobic007G148400 Sobic007G148400 Sobic009G059400--Sobic007G148400 Sobic006G224300 Sobic006G224300 Sobic009G059400--Sobic006G224300 Sobic007G158900 Sobic007G158900 Sobic009G199500--Sobic007G158900 Sobic009G227100 Sobic009G227100 Sobic009G199500--Sobic009G227100 Sobic003G445200 Sobic003G445200 Sobic009G199500--Sobic003G445200 Sobic002G299100 Sobic002G299100 Sobic009G199500--Sobic002G299100 Sobic002G131400 Sobic002G131400 Sobic009G199500--Sobic002G131400 Sobic004G122900 Sobic004G122900 Sobic009G199500--Sobic004G122900 Sobic009G199500--Sobic004G084400 Sobic001G043200 Sobic001G043200 Sobic009G199500--Sobic001G043200 Sobic002G398500 Sobic002G398500 Sobic009G199500--Sobic002G398500 Sobic007G036800 Sobic007G036800 Sobic004G145600--Sobic007G036800 Sobic004G145600--Sobic003G010900 Sobic004G145600--Sobic004G084400 Sobic003G005900 Sobic003G005900 Sobic004G145600--Sobic003G005900 Sobic005G040900 Sobic005G040900 Sobic004G145600--Sobic005G040900 Sobic003G062400 Sobic003G062400 Sobic004G145600--Sobic003G062400 Sobic004G145600--Sobic007G148400 Sobic004G145600--Sobic003G222700 Sobic010G059700 Sobic010G059700 Sobic004G145600--Sobic010G059700 Sobic009G122500 Sobic009G122500 Sobic003G113300--Sobic009G122500 Sobic002G296400 Sobic002G296400 Sobic003G113300--Sobic002G296400 Sobic002G014800 Sobic002G014800 Sobic003G113300--Sobic002G014800 Sobic001G474400 Sobic001G474400 Sobic003G113300--Sobic001G474400 Sobic001G030000 Sobic001G030000 Sobic003G113300--Sobic001G030000 Sobic003G113300--Sobic005G114500 Sobic007G030100 Sobic007G030100 Sobic003G113300--Sobic007G030100 Sobic003G113300--Sobic003G393200 Sobic003G113300--Sobic001G051400 Sobic006G245900 Sobic006G245900 Sobic007G016900--Sobic006G245900 Sobic007G187600 Sobic007G187600 Sobic007G016900--Sobic007G187600 Sobic003G413100 Sobic003G413100 Sobic007G016900--Sobic003G413100 Sobic007G016900--Sobic003G010900 Sobic007G016900--Sobic004G345400 Sobic007G016900--Sobic001G042200 Sobic002G343200 Sobic002G343200 Sobic007G016900--Sobic002G343200 Sobic007G016900--Sobic003G113300 Sobic009G040800 Sobic009G040800 Sobic007G016900--Sobic009G040800 Sobic004G256300 Sobic004G256300 Sobic003G222700--Sobic004G256300 Sobic001G467100 Sobic001G467100 Sobic003G222700--Sobic001G467100 Sobic010G172400 Sobic010G172400 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic007G022700 Sobic007G022700 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic003G222700--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic003G222700--Sobic002G142700 Sobic002G399900 Sobic002G399900 Sobic003G222700--Sobic002G399900
Octagon: transcription factors


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