Gene annotation
Transcriptome id Sobic.006G220400.1
Synonym Sb06g028980
Functional annotation exonuclease, putative, expressed
UniProt C5YG62
Pfam PF00929
Panther DB PTHR13058:SF18 PTHR13058
NCBI CDD KOG0542; Predicted exonuclease
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G26940 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os04g53200.2 : exonuclease, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G220400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G043200 expressed protein -
2 Sobic.005G123400 expressed protein -
3 Sobic.009G227100 expressed protein -
4 Sobic.006G012300 3-5 exonuclease domain-containing protein, putative, expressed -
5 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
6 Sobic.006G103700 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
7 Sobic.007G204000 methyl-binding domain protein MBD, putative, expressed -
8 Sobic.004G194100 expressed protein -
9 Sobic.004G334200 ribosomal protein S15 containing protein, expressed -
10 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -
11 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
12 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
13 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
14 Sobic.003G113300 expressed protein -
15 Sobic.003G194800 EF hand family protein, putative, expressed -
16 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
17 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
18 Sobic.001G498800 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
19 Sobic.002G392400 expressed protein -
20 Sobic.009G260700 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor


Gene co-expression network
sample Sobic006G220400 Sobic006G220400 Sobic001G043200 Sobic001G043200 Sobic006G220400--Sobic001G043200 Sobic005G123400 Sobic005G123400 Sobic006G220400--Sobic005G123400 Sobic009G227100 Sobic009G227100 Sobic006G220400--Sobic009G227100 Sobic006G012300 Sobic006G012300 Sobic006G220400--Sobic006G012300 Sobic001G203600 Sobic001G203600 Sobic006G220400--Sobic001G203600 Sobic006G103700 Sobic006G103700 Sobic006G220400--Sobic006G103700 Sobic007G204000 Sobic007G204000 Sobic006G220400--Sobic007G204000 Sobic004G194100 Sobic004G194100 Sobic006G220400--Sobic004G194100 Sobic004G334200 Sobic004G334200 Sobic006G220400--Sobic004G334200 Sobic001G043200--Sobic005G123400 Sobic003G190200 Sobic003G190200 Sobic001G043200--Sobic003G190200 Sobic003G021600 Sobic003G021600 Sobic001G043200--Sobic003G021600 Sobic003G394500 Sobic003G394500 Sobic001G043200--Sobic003G394500 Sobic009G122500 Sobic009G122500 Sobic001G043200--Sobic009G122500 Sobic007G030100 Sobic007G030100 Sobic001G043200--Sobic007G030100 Sobic004G122900 Sobic004G122900 Sobic001G043200--Sobic004G122900 Sobic009G154900 Sobic009G154900 Sobic001G043200--Sobic009G154900 Sobic003G194800 Sobic003G194800 Sobic001G043200--Sobic003G194800 Sobic006G237500 Sobic006G237500 Sobic005G123400--Sobic006G237500 Sobic010G112600 Sobic010G112600 Sobic005G123400--Sobic010G112600 Sobic003G393200 Sobic003G393200 Sobic005G123400--Sobic003G393200 Sobic005G123400--Sobic001G043200 Sobic005G123400--Sobic009G227100 Sobic009G252300 Sobic009G252300 Sobic005G123400--Sobic009G252300 Sobic005G123400--Sobic007G030100 Sobic005G123400--Sobic003G190200 Sobic003G368400 Sobic003G368400 Sobic005G123400--Sobic003G368400 Sobic009G227100--Sobic005G123400 Sobic009G227100--Sobic001G043200 Sobic009G199500 Sobic009G199500 Sobic009G227100--Sobic009G199500 Sobic009G227100--Sobic006G220400 Sobic009G227100--Sobic009G252300 Sobic001G052100 Sobic001G052100 Sobic009G227100--Sobic001G052100 Sobic009G227100--Sobic004G334200 Sobic009G227100--Sobic003G190200 Sobic009G227100--Sobic010G112600 Sobic009G040250 Sobic009G040250 Sobic006G012300--Sobic009G040250 Sobic007G105700 Sobic007G105700 Sobic006G012300--Sobic007G105700 Sobic003G420400 Sobic003G420400 Sobic006G012300--Sobic003G420400 Sobic006G119900 Sobic006G119900 Sobic006G012300--Sobic006G119900 Sobic010G274800 Sobic010G274800 Sobic006G012300--Sobic010G274800 Sobic009G040325 Sobic009G040325 Sobic006G012300--Sobic009G040325 Sobic002G392400 Sobic002G392400 Sobic006G012300--Sobic002G392400 Sobic006G012300--Sobic006G220400 Sobic005G087300 Sobic005G087300 Sobic006G012300--Sobic005G087300 Sobic010G086300 Sobic010G086300 Sobic001G203600--Sobic010G086300 Sobic001G117900 Sobic001G117900 Sobic001G203600--Sobic001G117900 Sobic001G203600--Sobic007G204000 Sobic001G203600--Sobic001G052100 Sobic008G072500 Sobic008G072500 Sobic001G203600--Sobic008G072500 Sobic007G226800 Sobic007G226800 Sobic001G203600--Sobic007G226800 Sobic002G182000 Sobic002G182000 Sobic001G203600--Sobic002G182000 Sobic001G203600--Sobic006G220400 Sobic009G063800 Sobic009G063800 Sobic001G203600--Sobic009G063800 Sobic006G103700--Sobic006G220400 Sobic003G113300 Sobic003G113300 Sobic006G103700--Sobic003G113300 Sobic006G170900 Sobic006G170900 Sobic006G103700--Sobic006G170900 Sobic006G103700--Sobic004G122900 Sobic004G060300 Sobic004G060300 Sobic006G103700--Sobic004G060300 Sobic006G103700--Sobic001G043200 Sobic001G335000 Sobic001G335000 Sobic006G103700--Sobic001G335000 Sobic006G103700--Sobic007G030100 Sobic001G521700 Sobic001G521700 Sobic006G103700--Sobic001G521700 Sobic007G204000--Sobic003G394500 Sobic007G118500 Sobic007G118500 Sobic007G204000--Sobic007G118500 Sobic007G204000--Sobic001G203600 Sobic007G204000--Sobic010G086300 Sobic003G409900 Sobic003G409900 Sobic007G204000--Sobic003G409900 Sobic007G204000--Sobic001G043200 Sobic006G191000 Sobic006G191000 Sobic007G204000--Sobic006G191000 Sobic007G204000--Sobic006G220400 Sobic001G385000 Sobic001G385000 Sobic007G204000--Sobic001G385000 Sobic004G194100--Sobic003G113300 Sobic004G194100--Sobic006G220400 Sobic002G364900 Sobic002G364900 Sobic004G194100--Sobic002G364900 Sobic004G194100--Sobic009G154900 Sobic002G399900 Sobic002G399900 Sobic004G194100--Sobic002G399900 Sobic001G051400 Sobic001G051400 Sobic004G194100--Sobic001G051400 Sobic004G194100--Sobic005G123400 Sobic002G386600 Sobic002G386600 Sobic004G194100--Sobic002G386600 Sobic004G194100--Sobic003G393200 Sobic003G113400 Sobic003G113400 Sobic004G334200--Sobic003G113400 Sobic004G334200--Sobic006G220400 Sobic004G334200--Sobic009G227100 Sobic004G334200--Sobic005G123400 Sobic004G334200--Sobic004G194100 Sobic004G334200--Sobic001G043200 Sobic003G445200 Sobic003G445200 Sobic004G334200--Sobic003G445200 Sobic004G334200--Sobic009G199500 Sobic004G334200--Sobic002G364900
Octagon: transcription factors


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