Gene annotation
Transcriptome id Sobic.009G260700.2,Sobic.009G260700.3,Sobic.009G260700.1
Synonym SCN1
Functional annotation rho GDP-dissociation inhibitor 1, putative, expressed
UniProt A0A1B6PAH9
Pfam PF02115
Panther DB PTHR10980 PTHR10980:SF17
NCBI CDD KOG3205; Rho GDP-dissociation inhibitor
KEGG Orthology K12462; ARHGDI, Rho GDP-dissociation inhibitor
Gene Ontology GO:0005737; cytoplasm GO:0005094Rho GDP-dissociation inhibitor activity


Orthologs (automatic annotation)
TAIR AT3G07880 : Immunoglobulin E-set superfamily protein
RAP-DB (Rice) LOC_Os01g68540.1 : rho GDP-dissociation inhibitor 1, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK04533 , KQK04534
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G260700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
2 Sobic.008G171400 phosphonate metabolism protein-related, putative, expressed -
3 Sobic.001G304000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
4 Sobic.001G537100 dehydrogenase-phosphopantetheinyltransferase, putative, expressed K06133: LYS5, 4'-phosphopantetheinyl transferase
5 Sobic.002G395500 ATP12 ATPase, putative, expressed K07556: ATPeAF2, ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
6 Sobic.006G220400 exonuclease, putative, expressed -
7 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
8 Sobic.003G166500 NAD dependent epimerase/dehydratase family protein, putative, expressed -
9 Sobic.008G168200 expressed protein -
10 Sobic.002G072300 5-nucleotidase surE, putative, expressed K03787: 5'-nucleotidase
11 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
12 Sobic.001G211900 methyltransferase, putative, expressed K11437: type I protein arginine methyltransferase
13 Sobic.010G133400 pantothenate kinase 4, putative, expressed -
14 Sobic.003G213400 expressed protein -
15 Sobic.006G103700 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
16 Sobic.001G203500 pentatricopeptide, putative, expressed -
17 Sobic.008G072500 SAM-dependent methyltransferase, putative, expressed K18162: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
18 Sobic.003G049200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
19 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
20 Sobic.002G200000 zinc finger, C3HC4 type, putative, expressed -


Gene co-expression network
sample Sobic009G260700 Sobic009G260700 Sobic003G202100 Sobic003G202100 Sobic009G260700--Sobic003G202100 Sobic008G171400 Sobic008G171400 Sobic009G260700--Sobic008G171400 Sobic001G304000 Sobic001G304000 Sobic009G260700--Sobic001G304000 Sobic001G537100 Sobic001G537100 Sobic009G260700--Sobic001G537100 Sobic002G395500 Sobic002G395500 Sobic009G260700--Sobic002G395500 Sobic006G220400 Sobic006G220400 Sobic009G260700--Sobic006G220400 Sobic001G389200 Sobic001G389200 Sobic009G260700--Sobic001G389200 Sobic003G166500 Sobic003G166500 Sobic009G260700--Sobic003G166500 Sobic008G168200 Sobic008G168200 Sobic009G260700--Sobic008G168200 Sobic003G202100--Sobic009G260700 Sobic003G202100--Sobic008G171400 Sobic003G202100--Sobic001G304000 Sobic003G202100--Sobic001G537100 Sobic003G304400 Sobic003G304400 Sobic003G202100--Sobic003G304400 Sobic003G392600 Sobic003G392600 Sobic003G202100--Sobic003G392600 Sobic002G071100 Sobic002G071100 Sobic003G202100--Sobic002G071100 Sobic003G388900 Sobic003G388900 Sobic003G202100--Sobic003G388900 Sobic003G202100--Sobic003G166500 Sobic008G171400--Sobic001G389200 Sobic007G118500 Sobic007G118500 Sobic008G171400--Sobic007G118500 Sobic008G171400--Sobic003G202100 Sobic008G171400--Sobic001G304000 Sobic010G133400 Sobic010G133400 Sobic008G171400--Sobic010G133400 Sobic003G156400 Sobic003G156400 Sobic008G171400--Sobic003G156400 Sobic001G205100 Sobic001G205100 Sobic008G171400--Sobic001G205100 Sobic008G171400--Sobic009G260700 Sobic008G171400--Sobic008G168200 Sobic001G304000--Sobic003G202100 Sobic001G304000--Sobic008G171400 Sobic005G018800 Sobic005G018800 Sobic001G304000--Sobic005G018800 Sobic001G304000--Sobic002G071100 Sobic001G304000--Sobic003G388900 Sobic006G020900 Sobic006G020900 Sobic001G304000--Sobic006G020900 Sobic001G178500 Sobic001G178500 Sobic001G304000--Sobic001G178500 Sobic007G206300 Sobic007G206300 Sobic001G304000--Sobic007G206300 Sobic001G304000--Sobic008G168200 Sobic001G537100--Sobic003G202100 Sobic001G537100--Sobic008G171400 Sobic001G116500 Sobic001G116500 Sobic001G537100--Sobic001G116500 Sobic006G039400 Sobic006G039400 Sobic001G537100--Sobic006G039400 Sobic001G537100--Sobic005G018800 Sobic001G537100--Sobic009G260700 Sobic004G094700 Sobic004G094700 Sobic001G537100--Sobic004G094700 Sobic010G192600 Sobic010G192600 Sobic001G537100--Sobic010G192600 Sobic001G537100--Sobic007G118500 Sobic002G395500--Sobic001G389200 Sobic002G395500--Sobic008G168200 Sobic003G394500 Sobic003G394500 Sobic002G395500--Sobic003G394500 Sobic007G028500 Sobic007G028500 Sobic002G395500--Sobic007G028500 Sobic003G190600 Sobic003G190600 Sobic002G395500--Sobic003G190600 Sobic006G012700 Sobic006G012700 Sobic002G395500--Sobic006G012700 Sobic001G047600 Sobic001G047600 Sobic002G395500--Sobic001G047600 Sobic004G254800 Sobic004G254800 Sobic002G395500--Sobic004G254800 Sobic006G060000 Sobic006G060000 Sobic002G395500--Sobic006G060000 Sobic001G043200 Sobic001G043200 Sobic006G220400--Sobic001G043200 Sobic005G123400 Sobic005G123400 Sobic006G220400--Sobic005G123400 Sobic009G227100 Sobic009G227100 Sobic006G220400--Sobic009G227100 Sobic006G012300 Sobic006G012300 Sobic006G220400--Sobic006G012300 Sobic001G203600 Sobic001G203600 Sobic006G220400--Sobic001G203600 Sobic006G103700 Sobic006G103700 Sobic006G220400--Sobic006G103700 Sobic007G204000 Sobic007G204000 Sobic006G220400--Sobic007G204000 Sobic004G194100 Sobic004G194100 Sobic006G220400--Sobic004G194100 Sobic004G334200 Sobic004G334200 Sobic006G220400--Sobic004G334200 Sobic001G389200--Sobic006G060000 Sobic001G389200--Sobic008G168200 Sobic001G389200--Sobic002G395500 Sobic002G355800 Sobic002G355800 Sobic001G389200--Sobic002G355800 Sobic001G389200--Sobic004G254800 Sobic004G078700 Sobic004G078700 Sobic001G389200--Sobic004G078700 Sobic007G172700 Sobic007G172700 Sobic001G389200--Sobic007G172700 Sobic010G169900 Sobic010G169900 Sobic001G389200--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic001G389200--Sobic009G122500 Sobic004G037200 Sobic004G037200 Sobic003G166500--Sobic004G037200 Sobic008G072500 Sobic008G072500 Sobic003G166500--Sobic008G072500 Sobic003G166500--Sobic003G202100 Sobic006G017800 Sobic006G017800 Sobic003G166500--Sobic006G017800 Sobic003G048600 Sobic003G048600 Sobic003G166500--Sobic003G048600 Sobic003G166500--Sobic005G018800 Sobic001G115700 Sobic001G115700 Sobic003G166500--Sobic001G115700 Sobic006G106300 Sobic006G106300 Sobic003G166500--Sobic006G106300 Sobic003G166500--Sobic010G133400 Sobic008G168200--Sobic001G389200 Sobic008G168200--Sobic001G205100 Sobic008G168200--Sobic002G395500 Sobic008G168200--Sobic006G060000 Sobic008G168200--Sobic003G156400 Sobic008G168200--Sobic003G394500 Sobic008G168200--Sobic006G012700 Sobic008G168200--Sobic008G171400 Sobic003G409900 Sobic003G409900 Sobic008G168200--Sobic003G409900
Octagon: transcription factors


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