Gene annotation
Transcriptome id Sobic.001G203500.5,Sobic.001G203500.2,Sobic.001G203500.3,Sobic.001G203500.4,Sobic.001G203500.6,Sobic.001G203500.1
Synonym Sb01g017960
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1Z5S6I8 , C5WWG0
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF625
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20710 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os10g35750.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a006431
Brachypodium KQJ97323
Barley -
Wheat TraesCS1A02G168700 , TraesCS1D02G166700 , TraesCS1B02G188200
Populus -


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cDNA sequences
Sobic.001G203500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G431600 expressed protein -
2 Sobic.004G157500 RNA polymerase III RPC4 domain containing protein, expressed K03026: RPC4, DNA-directed RNA polymerase III subunit RPC4
3 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
4 Sobic.004G354100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
5 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
6 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
7 Sobic.009G260700 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
8 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
9 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
10 Sobic.004G007700 pentatricopeptide, putative, expressed -
11 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
12 Sobic.004G348600 tetratricopeptide repeat containing protein, putative, expressed -
13 Sobic.004G231200 amine oxidase, putative, expressed K11450: KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
14 Sobic.003G321600 PPR repeat domain containing protein, putative, expressed -
15 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
16 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
17 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
18 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H
19 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
20 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4


Gene co-expression network
sample Sobic001G203500 Sobic001G203500 Sobic003G431600 Sobic003G431600 Sobic001G203500--Sobic003G431600 Sobic004G157500 Sobic004G157500 Sobic001G203500--Sobic004G157500 Sobic004G064600 Sobic004G064600 Sobic001G203500--Sobic004G064600 Sobic004G354100 Sobic004G354100 Sobic001G203500--Sobic004G354100 Sobic006G265600 Sobic006G265600 Sobic001G203500--Sobic006G265600 Sobic002G426100 Sobic002G426100 Sobic001G203500--Sobic002G426100 Sobic009G260700 Sobic009G260700 Sobic001G203500--Sobic009G260700 Sobic001G191900 Sobic001G191900 Sobic001G203500--Sobic001G191900 Sobic003G135500 Sobic003G135500 Sobic001G203500--Sobic003G135500 Sobic003G431600--Sobic003G135500 Sobic003G431600--Sobic001G203500 Sobic008G092800 Sobic008G092800 Sobic003G431600--Sobic008G092800 Sobic006G181800 Sobic006G181800 Sobic003G431600--Sobic006G181800 Sobic003G250900 Sobic003G250900 Sobic003G431600--Sobic003G250900 Sobic001G300000 Sobic001G300000 Sobic003G431600--Sobic001G300000 Sobic001G541000 Sobic001G541000 Sobic003G431600--Sobic001G541000 Sobic003G431600--Sobic002G426100 Sobic003G431600--Sobic006G265600 Sobic009G120400 Sobic009G120400 Sobic004G157500--Sobic009G120400 Sobic010G024000 Sobic010G024000 Sobic004G157500--Sobic010G024000 Sobic004G157500--Sobic004G064600 Sobic004G157500--Sobic001G203500 Sobic002G173400 Sobic002G173400 Sobic004G157500--Sobic002G173400 Sobic006G095000 Sobic006G095000 Sobic004G157500--Sobic006G095000 Sobic004G157500--Sobic002G426100 Sobic001G248400 Sobic001G248400 Sobic004G157500--Sobic001G248400 Sobic008G047500 Sobic008G047500 Sobic004G157500--Sobic008G047500 Sobic004G064600--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic004G064600--Sobic002G192900 Sobic004G064600--Sobic008G047500 Sobic001G323400 Sobic001G323400 Sobic004G064600--Sobic001G323400 Sobic001G082800 Sobic001G082800 Sobic004G064600--Sobic001G082800 Sobic002G390800 Sobic002G390800 Sobic004G064600--Sobic002G390800 Sobic008G004900 Sobic008G004900 Sobic004G064600--Sobic008G004900 Sobic007G186400 Sobic007G186400 Sobic004G064600--Sobic007G186400 Sobic002G308000 Sobic002G308000 Sobic004G064600--Sobic002G308000 Sobic001G229300 Sobic001G229300 Sobic004G354100--Sobic001G229300 Sobic003G085500 Sobic003G085500 Sobic004G354100--Sobic003G085500 Sobic010G002800 Sobic010G002800 Sobic004G354100--Sobic010G002800 Sobic004G354100--Sobic001G191900 Sobic004G256300 Sobic004G256300 Sobic004G354100--Sobic004G256300 Sobic007G022700 Sobic007G022700 Sobic004G354100--Sobic007G022700 Sobic004G354100--Sobic001G203500 Sobic002G153400 Sobic002G153400 Sobic004G354100--Sobic002G153400 Sobic001G485300 Sobic001G485300 Sobic004G354100--Sobic001G485300 Sobic003G397900 Sobic003G397900 Sobic006G265600--Sobic003G397900 Sobic001G474400 Sobic001G474400 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic003G005900 Sobic003G005900 Sobic006G265600--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic006G265600--Sobic001G151600 Sobic002G075900 Sobic002G075900 Sobic006G265600--Sobic002G075900 Sobic002G160700 Sobic002G160700 Sobic006G265600--Sobic002G160700 Sobic009G120500 Sobic009G120500 Sobic006G265600--Sobic009G120500 Sobic002G364900 Sobic002G364900 Sobic006G265600--Sobic002G364900 Sobic002G426100--Sobic009G120400 Sobic008G111600 Sobic008G111600 Sobic002G426100--Sobic008G111600 Sobic002G426100--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic003G202100 Sobic003G202100 Sobic009G260700--Sobic003G202100 Sobic008G171400 Sobic008G171400 Sobic009G260700--Sobic008G171400 Sobic001G304000 Sobic001G304000 Sobic009G260700--Sobic001G304000 Sobic001G537100 Sobic001G537100 Sobic009G260700--Sobic001G537100 Sobic002G395500 Sobic002G395500 Sobic009G260700--Sobic002G395500 Sobic006G220400 Sobic006G220400 Sobic009G260700--Sobic006G220400 Sobic001G389200 Sobic001G389200 Sobic009G260700--Sobic001G389200 Sobic003G166500 Sobic003G166500 Sobic009G260700--Sobic003G166500 Sobic008G168200 Sobic008G168200 Sobic009G260700--Sobic008G168200 Sobic006G106600 Sobic006G106600 Sobic001G191900--Sobic006G106600 Sobic001G191900--Sobic001G229300 Sobic004G277400 Sobic004G277400 Sobic001G191900--Sobic004G277400 Sobic001G191900--Sobic002G153400 Sobic001G191900--Sobic007G022700 Sobic007G051400 Sobic007G051400 Sobic001G191900--Sobic007G051400 Sobic001G191900--Sobic009G120400 Sobic001G191900--Sobic004G354100 Sobic001G191900--Sobic002G426100 Sobic006G280100 Sobic006G280100 Sobic003G135500--Sobic006G280100 Sobic003G135500--Sobic003G431600 Sobic003G299500 Sobic003G299500 Sobic003G135500--Sobic003G299500 Sobic003G135500--Sobic006G181800 Sobic003G135500--Sobic009G120400 Sobic003G360300 Sobic003G360300 Sobic003G135500--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic003G135500--Sobic008G080500 Sobic003G135500--Sobic008G092800 Sobic002G079100 Sobic002G079100 Sobic003G135500--Sobic002G079100
Octagon: transcription factors


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