Gene annotation
Transcriptome id Sobic.004G157500.2
Synonym
Functional annotation RNA polymerase III RPC4 domain containing protein, expressed
UniProt A0A1Z5RMQ2
Pfam PF05132
Panther DB PTHR13408
NCBI CDD -
KEGG Orthology K03026; RPC4, DNA-directed RNA polymerase III subunit RPC4
Gene Ontology GO:0006383; transcription by RNA polymerase III GO:0005666RNA polymerase III complex GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G09380 : RNA polymerase III RPC4
RAP-DB (Rice) LOC_Os04g32350.1 : RNA polymerase III RPC4 domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G120400 methyltransferase, putative, expressed -
2 Sobic.010G024000 transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
3 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
4 Sobic.001G203500 pentatricopeptide, putative, expressed -
5 Sobic.002G173400 expressed protein -
6 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
7 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
8 Sobic.001G248400 expressed protein -
9 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.009G136000 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
11 Sobic.008G004900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
12 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
13 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
14 Sobic.008G131900 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@resistance protein LR10, putative, expressed -
15 Sobic.001G300000 - -
16 Sobic.001G154300 DNA binding protein, putative, expressed -
17 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
18 Sobic.010G147500 tryptophan biosynthesis protein trpCF, putative, expressed K01817: phosphoribosylanthranilate isomerase
19 Sobic.007G154350 - -
20 Sobic.004G270300 - -


Gene co-expression network
sample Sobic004G157500 Sobic004G157500 Sobic009G120400 Sobic009G120400 Sobic004G157500--Sobic009G120400 Sobic010G024000 Sobic010G024000 Sobic004G157500--Sobic010G024000 Sobic004G064600 Sobic004G064600 Sobic004G157500--Sobic004G064600 Sobic001G203500 Sobic001G203500 Sobic004G157500--Sobic001G203500 Sobic002G173400 Sobic002G173400 Sobic004G157500--Sobic002G173400 Sobic006G095000 Sobic006G095000 Sobic004G157500--Sobic006G095000 Sobic002G426100 Sobic002G426100 Sobic004G157500--Sobic002G426100 Sobic001G248400 Sobic001G248400 Sobic004G157500--Sobic001G248400 Sobic008G047500 Sobic008G047500 Sobic004G157500--Sobic008G047500 Sobic009G120400--Sobic002G173400 Sobic009G120400--Sobic002G426100 Sobic007G034200 Sobic007G034200 Sobic009G120400--Sobic007G034200 Sobic003G194800 Sobic003G194800 Sobic009G120400--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G120400--Sobic004G215600 Sobic007G105700 Sobic007G105700 Sobic009G120400--Sobic007G105700 Sobic003G299500 Sobic003G299500 Sobic009G120400--Sobic003G299500 Sobic007G186400 Sobic007G186400 Sobic009G120400--Sobic007G186400 Sobic001G051400 Sobic001G051400 Sobic009G120400--Sobic001G051400 Sobic010G222800 Sobic010G222800 Sobic010G024000--Sobic010G222800 Sobic008G131900 Sobic008G131900 Sobic010G024000--Sobic008G131900 Sobic007G076200 Sobic007G076200 Sobic010G024000--Sobic007G076200 Sobic003G411700 Sobic003G411700 Sobic010G024000--Sobic003G411700 Sobic002G271400 Sobic002G271400 Sobic010G024000--Sobic002G271400 Sobic010G024000--Sobic002G173400 Sobic006G193100 Sobic006G193100 Sobic010G024000--Sobic006G193100 Sobic003G343200 Sobic003G343200 Sobic010G024000--Sobic003G343200 Sobic002G052800 Sobic002G052800 Sobic010G024000--Sobic002G052800 Sobic004G064600--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic004G064600--Sobic002G192900 Sobic004G064600--Sobic008G047500 Sobic001G323400 Sobic001G323400 Sobic004G064600--Sobic001G323400 Sobic001G082800 Sobic001G082800 Sobic004G064600--Sobic001G082800 Sobic002G390800 Sobic002G390800 Sobic004G064600--Sobic002G390800 Sobic008G004900 Sobic008G004900 Sobic004G064600--Sobic008G004900 Sobic004G064600--Sobic007G186400 Sobic002G308000 Sobic002G308000 Sobic004G064600--Sobic002G308000 Sobic003G431600 Sobic003G431600 Sobic001G203500--Sobic003G431600 Sobic001G203500--Sobic004G157500 Sobic001G203500--Sobic004G064600 Sobic004G354100 Sobic004G354100 Sobic001G203500--Sobic004G354100 Sobic006G265600 Sobic006G265600 Sobic001G203500--Sobic006G265600 Sobic001G203500--Sobic002G426100 Sobic009G260700 Sobic009G260700 Sobic001G203500--Sobic009G260700 Sobic001G191900 Sobic001G191900 Sobic001G203500--Sobic001G191900 Sobic003G135500 Sobic003G135500 Sobic001G203500--Sobic003G135500 Sobic002G173400--Sobic008G131900 Sobic002G173400--Sobic009G120400 Sobic002G173400--Sobic003G194800 Sobic002G173400--Sobic008G047500 Sobic002G173400--Sobic002G052800 Sobic010G038200 Sobic010G038200 Sobic002G173400--Sobic010G038200 Sobic010G143600 Sobic010G143600 Sobic002G173400--Sobic010G143600 Sobic004G000400 Sobic004G000400 Sobic002G173400--Sobic004G000400 Sobic005G060100 Sobic005G060100 Sobic002G173400--Sobic005G060100 Sobic003G184300 Sobic003G184300 Sobic006G095000--Sobic003G184300 Sobic006G095000--Sobic002G192900 Sobic006G095000--Sobic004G064600 Sobic006G095000--Sobic008G047500 Sobic006G095000--Sobic004G215600 Sobic006G095000--Sobic001G323400 Sobic006G095000--Sobic002G308000 Sobic003G045000 Sobic003G045000 Sobic006G095000--Sobic003G045000 Sobic006G095000--Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic008G111600 Sobic008G111600 Sobic002G426100--Sobic008G111600 Sobic006G181800 Sobic006G181800 Sobic002G426100--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic001G248400--Sobic010G038200 Sobic008G104000 Sobic008G104000 Sobic001G248400--Sobic008G104000 Sobic001G248400--Sobic008G004900 Sobic001G126800 Sobic001G126800 Sobic001G248400--Sobic001G126800 Sobic001G248400--Sobic002G308000 Sobic003G423700 Sobic003G423700 Sobic001G248400--Sobic003G423700 Sobic010G009700 Sobic010G009700 Sobic001G248400--Sobic010G009700 Sobic004G213400 Sobic004G213400 Sobic001G248400--Sobic004G213400 Sobic001G248400--Sobic002G390800 Sobic008G085950 Sobic008G085950 Sobic008G047500--Sobic008G085950 Sobic003G204100 Sobic003G204100 Sobic008G047500--Sobic003G204100 Sobic008G047500--Sobic003G194800 Sobic007G102000 Sobic007G102000 Sobic008G047500--Sobic007G102000 Sobic008G047500--Sobic002G390800 Sobic008G047500--Sobic002G173400 Sobic004G298600 Sobic004G298600 Sobic008G047500--Sobic004G298600 Sobic008G047500--Sobic007G105700 Sobic008G047500--Sobic010G009700
Octagon: transcription factors


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