Gene annotation
Transcriptome id Sobic.010G147500.1
Synonym PAI1, TRP6, Sb10g019710
Functional annotation tryptophan biosynthesis protein trpCF, putative, expressed
UniProt C5Z371
Pfam PF00697
Panther DB PTHR22854 PTHR22854:SF12
NCBI CDD KOG4202; Phosphoribosylanthranilate isomerase
KEGG Orthology K01817; phosphoribosylanthranilate isomerase
Gene Ontology GO:0006568; tryptophan metabolic process GO:0004640phosphoribosylanthranilate isomerase activity


Orthologs (automatic annotation)
TAIR AT1G07780 : phosphoribosylanthranilate isomerase 1
RAP-DB (Rice) LOC_Os02g16630.1 : tryptophan biosynthesis protein trpCF, putative, expressed
MaizeGDB (Corn) Zm00025a042829
Brachypodium KQJ86188
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G147500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
2 Sobic.001G529500 PPR repeat domain containing protein, putative, expressed -
3 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
4 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
5 Sobic.001G440000 ras-related protein, putative, expressed K07933: Rab-like protein 3
6 Sobic.003G204100 expressed protein -
7 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
8 Sobic.001G248400 expressed protein -
9 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
10 Sobic.007G226800 -(PubMedID : 26976818)@dicarboxylate transporter 5(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
11 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
12 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.010G123100 transporter-related, putative, expressed -
14 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
15 Sobic.008G004900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
16 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
17 Sobic.002G392400 expressed protein -
18 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
19 Sobic.007G111300 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
20 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23


Gene co-expression network
sample Sobic010G147500 Sobic010G147500 Sobic001G117900 Sobic001G117900 Sobic010G147500--Sobic001G117900 Sobic001G529500 Sobic001G529500 Sobic010G147500--Sobic001G529500 Sobic010G188900 Sobic010G188900 Sobic010G147500--Sobic010G188900 Sobic002G308000 Sobic002G308000 Sobic010G147500--Sobic002G308000 Sobic001G440000 Sobic001G440000 Sobic010G147500--Sobic001G440000 Sobic003G204100 Sobic003G204100 Sobic010G147500--Sobic003G204100 Sobic006G095000 Sobic006G095000 Sobic010G147500--Sobic006G095000 Sobic001G248400 Sobic001G248400 Sobic010G147500--Sobic001G248400 Sobic004G298600 Sobic004G298600 Sobic010G147500--Sobic004G298600 Sobic001G117900--Sobic002G308000 Sobic001G433600 Sobic001G433600 Sobic001G117900--Sobic001G433600 Sobic002G392400 Sobic002G392400 Sobic001G117900--Sobic002G392400 Sobic007G086600 Sobic007G086600 Sobic001G117900--Sobic007G086600 Sobic005G060100 Sobic005G060100 Sobic001G117900--Sobic005G060100 Sobic007G105700 Sobic007G105700 Sobic001G117900--Sobic007G105700 Sobic002G348400 Sobic002G348400 Sobic001G117900--Sobic002G348400 Sobic009G025700 Sobic009G025700 Sobic001G117900--Sobic009G025700 Sobic003G004800 Sobic003G004800 Sobic001G117900--Sobic003G004800 Sobic005G210500 Sobic005G210500 Sobic001G529500--Sobic005G210500 Sobic001G327100 Sobic001G327100 Sobic001G529500--Sobic001G327100 Sobic001G486600 Sobic001G486600 Sobic001G529500--Sobic001G486600 Sobic001G529500--Sobic010G147500 Sobic001G268300 Sobic001G268300 Sobic001G529500--Sobic001G268300 Sobic001G529500--Sobic010G188900 Sobic001G203600 Sobic001G203600 Sobic001G529500--Sobic001G203600 Sobic001G023600 Sobic001G023600 Sobic001G529500--Sobic001G023600 Sobic003G418400 Sobic003G418400 Sobic001G529500--Sobic003G418400 Sobic010G188900--Sobic002G308000 Sobic002G192900 Sobic002G192900 Sobic010G188900--Sobic002G192900 Sobic010G253200 Sobic010G253200 Sobic010G188900--Sobic010G253200 Sobic008G132200 Sobic008G132200 Sobic010G188900--Sobic008G132200 Sobic003G045000 Sobic003G045000 Sobic010G188900--Sobic003G045000 Sobic003G075200 Sobic003G075200 Sobic010G188900--Sobic003G075200 Sobic010G080900 Sobic010G080900 Sobic010G188900--Sobic010G080900 Sobic001G352800 Sobic001G352800 Sobic010G188900--Sobic001G352800 Sobic008G104000 Sobic008G104000 Sobic010G188900--Sobic008G104000 Sobic002G308000--Sobic002G392400 Sobic002G308000--Sobic007G105700 Sobic002G308000--Sobic001G117900 Sobic002G308000--Sobic001G433600 Sobic003G293400 Sobic003G293400 Sobic002G308000--Sobic003G293400 Sobic002G308000--Sobic010G253200 Sobic001G131900 Sobic001G131900 Sobic002G308000--Sobic001G131900 Sobic007G111300 Sobic007G111300 Sobic002G308000--Sobic007G111300 Sobic002G308000--Sobic002G192900 Sobic002G239400 Sobic002G239400 Sobic001G440000--Sobic002G239400 Sobic010G153400 Sobic010G153400 Sobic001G440000--Sobic010G153400 Sobic009G066200 Sobic009G066200 Sobic001G440000--Sobic009G066200 Sobic001G440000--Sobic004G298600 Sobic001G440000--Sobic001G131900 Sobic003G435300 Sobic003G435300 Sobic001G440000--Sobic003G435300 Sobic004G213400 Sobic004G213400 Sobic001G440000--Sobic004G213400 Sobic001G091701 Sobic001G091701 Sobic001G440000--Sobic001G091701 Sobic001G440000--Sobic002G392400 Sobic008G047500 Sobic008G047500 Sobic003G204100--Sobic008G047500 Sobic003G194800 Sobic003G194800 Sobic003G204100--Sobic003G194800 Sobic003G045450 Sobic003G045450 Sobic003G204100--Sobic003G045450 Sobic003G204100--Sobic004G298600 Sobic008G085950 Sobic008G085950 Sobic003G204100--Sobic008G085950 Sobic002G173400 Sobic002G173400 Sobic003G204100--Sobic002G173400 Sobic010G143600 Sobic010G143600 Sobic003G204100--Sobic010G143600 Sobic003G204100--Sobic001G117900 Sobic007G102000 Sobic007G102000 Sobic003G204100--Sobic007G102000 Sobic003G184300 Sobic003G184300 Sobic006G095000--Sobic003G184300 Sobic006G095000--Sobic002G192900 Sobic004G064600 Sobic004G064600 Sobic006G095000--Sobic004G064600 Sobic006G095000--Sobic008G047500 Sobic004G215600 Sobic004G215600 Sobic006G095000--Sobic004G215600 Sobic001G323400 Sobic001G323400 Sobic006G095000--Sobic001G323400 Sobic006G095000--Sobic002G308000 Sobic006G095000--Sobic003G045000 Sobic009G120400 Sobic009G120400 Sobic006G095000--Sobic009G120400 Sobic010G038200 Sobic010G038200 Sobic001G248400--Sobic010G038200 Sobic001G248400--Sobic008G104000 Sobic008G004900 Sobic008G004900 Sobic001G248400--Sobic008G004900 Sobic001G126800 Sobic001G126800 Sobic001G248400--Sobic001G126800 Sobic001G248400--Sobic002G308000 Sobic003G423700 Sobic003G423700 Sobic001G248400--Sobic003G423700 Sobic010G009700 Sobic010G009700 Sobic001G248400--Sobic010G009700 Sobic001G248400--Sobic004G213400 Sobic002G390800 Sobic002G390800 Sobic001G248400--Sobic002G390800 Sobic001G385300 Sobic001G385300 Sobic004G298600--Sobic001G385300 Sobic004G298600--Sobic001G131900 Sobic004G298600--Sobic003G293400 Sobic004G026600 Sobic004G026600 Sobic004G298600--Sobic004G026600 Sobic004G298600--Sobic005G060100 Sobic001G308500 Sobic001G308500 Sobic004G298600--Sobic001G308500 Sobic004G298600--Sobic001G433600 Sobic004G298600--Sobic007G105700 Sobic003G352900 Sobic003G352900 Sobic004G298600--Sobic003G352900
Octagon: transcription factors


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