Gene annotation
Transcriptome id Sobic.001G440000.1,Sobic.001G440000.4,Sobic.001G440000.3,Sobic.001G440000.2
Synonym Sb01g041370, LIP1
Functional annotation ras-related protein, putative, expressed
UniProt A0A1Z5SAF9 , C5WR10 , A0A1B6QPE2
Pfam PF00071
Panther DB PTHR24073 PTHR24073:SF492
NCBI CDD KOG0080; GTPase Rab18, small G protein superfamily
KEGG Orthology K07933; Rab-like protein 3
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT5G64813 : Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os03g13860.1,LOC_Os10g04580.2 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a052914 , Zm00025a017991
Brachypodium KQK22597 , KQK22596 , PNT77738
Barley HORVU4Hr1G063900.23 , HORVU4Hr1G063900.22 , HORVU4Hr1G063900.21 , HORVU4Hr1G063900.20 , HORVU1Hr1G045310.1 , HORVU1Hr1G045310.2 , HORVU1Hr1G045310.3 , HORVU1Hr1G045310.4 , HORVU1Hr1G045310.5 , HORVU1Hr1G045310.6 , HORVU1Hr1G045310.7 , HORVU1Hr1G045310.8 , HORVU1Hr1G045310.9 , HORVU4Hr1G063900.14 , HORVU4Hr1G063900.15 , HORVU4Hr1G063900.12 , HORVU4Hr1G063900.13 , HORVU4Hr1G063900.10 , HORVU4Hr1G063900.11 , HORVU1Hr1G045310.10 , HORVU4Hr1G063900.18 , HORVU4Hr1G063900.19 , HORVU4Hr1G063900.16 , HORVU4Hr1G063900.17 , HORVU1Hr1G045310.11 , HORVU4Hr1G063900.8 , HORVU4Hr1G063900.9 , HORVU4Hr1G063900.4 , HORVU4Hr1G063900.5 , HORVU4Hr1G063900.6 , HORVU4Hr1G063900.7 , HORVU4Hr1G063900.2 , HORVU4Hr1G063900.3
Wheat TraesCS1B02G205000 , TraesCS4B02G227700 , TraesCS4B02G227700 , TraesCS4D02G228600 , TraesCS4D02G228600 , TraesCS4D02G228600 , TraesCS4D02G228600 , TraesCS4A02G071800 , TraesCS1D02G166300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G239400 OsFBX338 - F-box domain containing protein, expressed -
2 Sobic.010G153400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
3 Sobic.009G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
4 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
5 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
6 Sobic.003G435300 OsDegp14 - Putative Deg protease homologue, expressed -
7 Sobic.004G213400 ATP8, putative, expressed -
8 Sobic.001G091701 - -
9 Sobic.002G392400 expressed protein -
10 Sobic.009G168150 - -
11 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
12 Sobic.010G147500 tryptophan biosynthesis protein trpCF, putative, expressed K01817: phosphoribosylanthranilate isomerase
13 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
14 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
15 Sobic.001G248400 expressed protein -
16 Sobic.009G084800 - -
17 Sobic.008G162300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
18 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
19 Sobic.002G241100 glycosyl transferase 8 domain containing protein, putative, expressed -
20 Sobic.010G036901 - -


Gene co-expression network
sample Sobic001G440000 Sobic001G440000 Sobic002G239400 Sobic002G239400 Sobic001G440000--Sobic002G239400 Sobic010G153400 Sobic010G153400 Sobic001G440000--Sobic010G153400 Sobic009G066200 Sobic009G066200 Sobic001G440000--Sobic009G066200 Sobic004G298600 Sobic004G298600 Sobic001G440000--Sobic004G298600 Sobic001G131900 Sobic001G131900 Sobic001G440000--Sobic001G131900 Sobic003G435300 Sobic003G435300 Sobic001G440000--Sobic003G435300 Sobic004G213400 Sobic004G213400 Sobic001G440000--Sobic004G213400 Sobic001G091701 Sobic001G091701 Sobic001G440000--Sobic001G091701 Sobic002G392400 Sobic002G392400 Sobic001G440000--Sobic002G392400 Sobic002G239400--Sobic004G213400 Sobic002G348400 Sobic002G348400 Sobic002G239400--Sobic002G348400 Sobic002G239400--Sobic001G131900 Sobic001G117900 Sobic001G117900 Sobic002G239400--Sobic001G117900 Sobic002G239400--Sobic002G392400 Sobic003G293400 Sobic003G293400 Sobic002G239400--Sobic003G293400 Sobic007G105700 Sobic007G105700 Sobic002G239400--Sobic007G105700 Sobic009G054400 Sobic009G054400 Sobic002G239400--Sobic009G054400 Sobic005G048600 Sobic005G048600 Sobic002G239400--Sobic005G048600 Sobic010G153400--Sobic002G348400 Sobic003G004800 Sobic003G004800 Sobic010G153400--Sobic003G004800 Sobic010G153400--Sobic002G392400 Sobic008G022400 Sobic008G022400 Sobic010G153400--Sobic008G022400 Sobic010G153400--Sobic001G131900 Sobic010G153400--Sobic003G293400 Sobic006G265800 Sobic006G265800 Sobic010G153400--Sobic006G265800 Sobic010G153400--Sobic001G117900 Sobic004G328100 Sobic004G328100 Sobic010G153400--Sobic004G328100 Sobic009G066200--Sobic001G131900 Sobic002G322700 Sobic002G322700 Sobic009G066200--Sobic002G322700 Sobic001G309200 Sobic001G309200 Sobic009G066200--Sobic001G309200 Sobic005G045800 Sobic005G045800 Sobic009G066200--Sobic005G045800 Sobic009G066200--Sobic002G348400 Sobic009G066200--Sobic006G265800 Sobic001G433600 Sobic001G433600 Sobic009G066200--Sobic001G433600 Sobic009G066200--Sobic004G298600 Sobic001G385300 Sobic001G385300 Sobic009G066200--Sobic001G385300 Sobic004G298600--Sobic001G385300 Sobic004G298600--Sobic001G131900 Sobic004G298600--Sobic003G293400 Sobic004G026600 Sobic004G026600 Sobic004G298600--Sobic004G026600 Sobic005G060100 Sobic005G060100 Sobic004G298600--Sobic005G060100 Sobic001G308500 Sobic001G308500 Sobic004G298600--Sobic001G308500 Sobic004G298600--Sobic001G433600 Sobic004G298600--Sobic007G105700 Sobic003G352900 Sobic003G352900 Sobic004G298600--Sobic003G352900 Sobic001G131900--Sobic003G293400 Sobic001G131900--Sobic003G352900 Sobic004G038400 Sobic004G038400 Sobic001G131900--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G131900--Sobic001G076600 Sobic001G131900--Sobic001G385300 Sobic001G131900--Sobic005G045800 Sobic001G131900--Sobic004G298600 Sobic002G420100 Sobic002G420100 Sobic001G131900--Sobic002G420100 Sobic007G144100 Sobic007G144100 Sobic001G131900--Sobic007G144100 Sobic008G054700 Sobic008G054700 Sobic003G435300--Sobic008G054700 Sobic003G435300--Sobic006G265800 Sobic001G539400 Sobic001G539400 Sobic003G435300--Sobic001G539400 Sobic003G435300--Sobic010G153400 Sobic003G358600 Sobic003G358600 Sobic003G435300--Sobic003G358600 Sobic008G120920 Sobic008G120920 Sobic003G435300--Sobic008G120920 Sobic001G384200 Sobic001G384200 Sobic003G435300--Sobic001G384200 Sobic009G220700 Sobic009G220700 Sobic003G435300--Sobic009G220700 Sobic001G400000 Sobic001G400000 Sobic003G435300--Sobic001G400000 Sobic004G213400--Sobic002G239400 Sobic005G110547 Sobic005G110547 Sobic004G213400--Sobic005G110547 Sobic004G213400--Sobic004G298600 Sobic004G213400--Sobic003G293400 Sobic001G248400 Sobic001G248400 Sobic004G213400--Sobic001G248400 Sobic004G213400--Sobic001G131900 Sobic004G213400--Sobic009G220700 Sobic002G308000 Sobic002G308000 Sobic004G213400--Sobic002G308000 Sobic004G213400--Sobic007G105700 Sobic003G217800 Sobic003G217800 Sobic001G091701--Sobic003G217800 Sobic004G062600 Sobic004G062600 Sobic001G091701--Sobic004G062600 Sobic001G091701--Sobic005G048600 Sobic001G091701--Sobic003G293400 Sobic001G091701--Sobic009G220700 Sobic003G423700 Sobic003G423700 Sobic001G091701--Sobic003G423700 Sobic010G182000 Sobic010G182000 Sobic001G091701--Sobic010G182000 Sobic007G102300 Sobic007G102300 Sobic001G091701--Sobic007G102300 Sobic001G352800 Sobic001G352800 Sobic001G091701--Sobic001G352800 Sobic002G392400--Sobic007G105700 Sobic002G392400--Sobic002G308000 Sobic002G392400--Sobic001G117900 Sobic002G392400--Sobic002G348400 Sobic002G313100 Sobic002G313100 Sobic002G392400--Sobic002G313100 Sobic002G392400--Sobic003G293400 Sobic002G392400--Sobic001G131900 Sobic006G232800 Sobic006G232800 Sobic002G392400--Sobic006G232800 Sobic002G392400--Sobic010G153400
Octagon: transcription factors


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