Gene annotation
Transcriptome id Sobic.008G162300.2
Synonym Sb08g020890
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt A0A1Z5R859
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF540
NCBI CDD KOG1611; Predicted short chain-type dehydrogenase
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G20760 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os12g41590.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004652
Brachypodium KQJ85872 , KQJ85873
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G153400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
2 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
3 Sobic.001G440000 ras-related protein, putative, expressed K07933: Rab-like protein 3
4 Sobic.009G229400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
5 Sobic.009G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
6 Sobic.004G116400 OsFBK5 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.001G539400 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
8 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
9 Sobic.005G174750 - -
10 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -
11 Sobic.010G038000 ATP-binding region, ATPase-like domain containing protein, expressed -
12 Sobic.008G022400 EMB2748, putative, expressed -
13 Sobic.001G453600 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
14 Sobic.004G145701 - K02978: RP-S27e, small subunit ribosomal protein S27e
15 Sobic.009G156800 expressed protein -
16 Sobic.002G226800 protein phosphotase protein, putative, expressed -
17 Sobic.003G435300 OsDegp14 - Putative Deg protease homologue, expressed -
18 Sobic.003G004800 ATP binding protein, putative, expressed -
19 Sobic.004G045632 - -
20 Sobic.008G007700 expressed protein -


Gene co-expression network
sample Sobic008G162300 Sobic008G162300 Sobic010G153400 Sobic010G153400 Sobic008G162300--Sobic010G153400 Sobic002G348400 Sobic002G348400 Sobic008G162300--Sobic002G348400 Sobic001G440000 Sobic001G440000 Sobic008G162300--Sobic001G440000 Sobic009G229400 Sobic009G229400 Sobic008G162300--Sobic009G229400 Sobic009G066200 Sobic009G066200 Sobic008G162300--Sobic009G066200 Sobic004G116400 Sobic004G116400 Sobic008G162300--Sobic004G116400 Sobic001G539400 Sobic001G539400 Sobic008G162300--Sobic001G539400 Sobic004G038400 Sobic004G038400 Sobic008G162300--Sobic004G038400 Sobic005G174750 Sobic005G174750 Sobic008G162300--Sobic005G174750 Sobic010G153400--Sobic002G348400 Sobic003G004800 Sobic003G004800 Sobic010G153400--Sobic003G004800 Sobic002G392400 Sobic002G392400 Sobic010G153400--Sobic002G392400 Sobic008G022400 Sobic008G022400 Sobic010G153400--Sobic008G022400 Sobic001G131900 Sobic001G131900 Sobic010G153400--Sobic001G131900 Sobic003G293400 Sobic003G293400 Sobic010G153400--Sobic003G293400 Sobic006G265800 Sobic006G265800 Sobic010G153400--Sobic006G265800 Sobic001G117900 Sobic001G117900 Sobic010G153400--Sobic001G117900 Sobic004G328100 Sobic004G328100 Sobic010G153400--Sobic004G328100 Sobic002G348400--Sobic010G153400 Sobic002G348400--Sobic002G392400 Sobic007G086600 Sobic007G086600 Sobic002G348400--Sobic007G086600 Sobic002G348400--Sobic001G117900 Sobic001G305900 Sobic001G305900 Sobic002G348400--Sobic001G305900 Sobic001G309200 Sobic001G309200 Sobic002G348400--Sobic001G309200 Sobic001G280500 Sobic001G280500 Sobic002G348400--Sobic001G280500 Sobic002G348400--Sobic003G004800 Sobic001G188000 Sobic001G188000 Sobic002G348400--Sobic001G188000 Sobic002G239400 Sobic002G239400 Sobic001G440000--Sobic002G239400 Sobic001G440000--Sobic010G153400 Sobic001G440000--Sobic009G066200 Sobic004G298600 Sobic004G298600 Sobic001G440000--Sobic004G298600 Sobic001G440000--Sobic001G131900 Sobic003G435300 Sobic003G435300 Sobic001G440000--Sobic003G435300 Sobic004G213400 Sobic004G213400 Sobic001G440000--Sobic004G213400 Sobic001G091701 Sobic001G091701 Sobic001G440000--Sobic001G091701 Sobic001G440000--Sobic002G392400 Sobic008G029800 Sobic008G029800 Sobic009G229400--Sobic008G029800 Sobic010G266600 Sobic010G266600 Sobic009G229400--Sobic010G266600 Sobic010G038300 Sobic010G038300 Sobic009G229400--Sobic010G038300 Sobic002G192800 Sobic002G192800 Sobic009G229400--Sobic002G192800 Sobic006G204400 Sobic006G204400 Sobic009G229400--Sobic006G204400 Sobic008G071800 Sobic008G071800 Sobic009G229400--Sobic008G071800 Sobic009G229400--Sobic005G174750 Sobic006G070032 Sobic006G070032 Sobic009G229400--Sobic006G070032 Sobic002G060101 Sobic002G060101 Sobic009G229400--Sobic002G060101 Sobic009G066200--Sobic001G131900 Sobic002G322700 Sobic002G322700 Sobic009G066200--Sobic002G322700 Sobic009G066200--Sobic001G309200 Sobic005G045800 Sobic005G045800 Sobic009G066200--Sobic005G045800 Sobic009G066200--Sobic002G348400 Sobic009G066200--Sobic006G265800 Sobic001G433600 Sobic001G433600 Sobic009G066200--Sobic001G433600 Sobic009G066200--Sobic004G298600 Sobic001G385300 Sobic001G385300 Sobic009G066200--Sobic001G385300 Sobic001G400000 Sobic001G400000 Sobic004G116400--Sobic001G400000 Sobic004G046800 Sobic004G046800 Sobic004G116400--Sobic004G046800 Sobic005G050400 Sobic005G050400 Sobic004G116400--Sobic005G050400 Sobic004G145701 Sobic004G145701 Sobic004G116400--Sobic004G145701 Sobic001G112600 Sobic001G112600 Sobic004G116400--Sobic001G112600 Sobic002G054700 Sobic002G054700 Sobic004G116400--Sobic002G054700 Sobic008G120920 Sobic008G120920 Sobic004G116400--Sobic008G120920 Sobic008G054700 Sobic008G054700 Sobic004G116400--Sobic008G054700 Sobic004G113600 Sobic004G113600 Sobic004G116400--Sobic004G113600 Sobic001G539400--Sobic008G054700 Sobic003G065201 Sobic003G065201 Sobic001G539400--Sobic003G065201 Sobic008G007700 Sobic008G007700 Sobic001G539400--Sobic008G007700 Sobic003G358600 Sobic003G358600 Sobic001G539400--Sobic003G358600 Sobic001G539400--Sobic005G174750 Sobic006G193400 Sobic006G193400 Sobic001G539400--Sobic006G193400 Sobic009G178400 Sobic009G178400 Sobic001G539400--Sobic009G178400 Sobic001G539400--Sobic009G229400 Sobic001G387300 Sobic001G387300 Sobic001G539400--Sobic001G387300 Sobic005G173700 Sobic005G173700 Sobic004G038400--Sobic005G173700 Sobic009G048700 Sobic009G048700 Sobic004G038400--Sobic009G048700 Sobic001G076600 Sobic001G076600 Sobic004G038400--Sobic001G076600 Sobic004G168900 Sobic004G168900 Sobic004G038400--Sobic004G168900 Sobic003G005700 Sobic003G005700 Sobic004G038400--Sobic003G005700 Sobic007G144100 Sobic007G144100 Sobic004G038400--Sobic007G144100 Sobic002G243400 Sobic002G243400 Sobic004G038400--Sobic002G243400 Sobic008G056600 Sobic008G056600 Sobic004G038400--Sobic008G056600 Sobic009G002100 Sobic009G002100 Sobic004G038400--Sobic009G002100 Sobic005G174750--Sobic009G229400 Sobic007G128000 Sobic007G128000 Sobic005G174750--Sobic007G128000 Sobic004G228300 Sobic004G228300 Sobic005G174750--Sobic004G228300 Sobic001G417700 Sobic001G417700 Sobic005G174750--Sobic001G417700 Sobic006G266400 Sobic006G266400 Sobic005G174750--Sobic006G266400 Sobic002G189500 Sobic002G189500 Sobic005G174750--Sobic002G189500 Sobic005G174750--Sobic006G204400 Sobic005G174750--Sobic002G060101 Sobic001G240600 Sobic001G240600 Sobic005G174750--Sobic001G240600
Octagon: transcription factors


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