Gene annotation
Transcriptome id Sobic.004G116400.1,Sobic.004G116400.2
Synonym HWS, Sb04g009700, HS
Functional annotation OsFBK5 - F-box domain and kelch repeat containing protein, expressed
UniProt A0A194YP15
Pfam PF12937
Panther DB PTHR10706 PTHR10706:SF127
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G61590 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os02g15950.1 : OsFBK5 - F-box domain and kelch repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a019892 , Zm00025a034390
Brachypodium PNT66297
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G116400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
2 Sobic.004G046800 expressed protein -
3 Sobic.005G050400 syntaxin 6, putative, expressed -
4 Sobic.004G145701 - K02978: RP-S27e, small subunit ribosomal protein S27e
5 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
6 Sobic.002G054700 indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K01695: tryptophan synthase alpha chain
7 Sobic.008G120920 - -
8 Sobic.008G054700 growth regulator related protein, putative, expressed -
9 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
10 Sobic.003G348100 white-brown complex homolog protein, putative, expressed -
11 Sobic.004G007400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
12 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
13 Sobic.003G441000 rhoGAP domain containing protein, expressed -
14 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
16 Sobic.003G349900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
17 Sobic.008G030501 - -
18 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G065100 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR1 - Auxin-responsive SAUR gene family member, expressed -
20 Sobic.010G124900 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase


Gene co-expression network
sample Sobic004G116400 Sobic004G116400 Sobic001G400000 Sobic001G400000 Sobic004G116400--Sobic001G400000 Sobic004G046800 Sobic004G046800 Sobic004G116400--Sobic004G046800 Sobic005G050400 Sobic005G050400 Sobic004G116400--Sobic005G050400 Sobic004G145701 Sobic004G145701 Sobic004G116400--Sobic004G145701 Sobic001G112600 Sobic001G112600 Sobic004G116400--Sobic001G112600 Sobic002G054700 Sobic002G054700 Sobic004G116400--Sobic002G054700 Sobic008G120920 Sobic008G120920 Sobic004G116400--Sobic008G120920 Sobic008G054700 Sobic008G054700 Sobic004G116400--Sobic008G054700 Sobic004G113600 Sobic004G113600 Sobic004G116400--Sobic004G113600 Sobic001G400000--Sobic004G113600 Sobic001G400000--Sobic001G112600 Sobic001G384200 Sobic001G384200 Sobic001G400000--Sobic001G384200 Sobic001G400000--Sobic005G050400 Sobic003G244400 Sobic003G244400 Sobic001G400000--Sobic003G244400 Sobic006G265800 Sobic006G265800 Sobic001G400000--Sobic006G265800 Sobic004G007400 Sobic004G007400 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic008G156600 Sobic008G156600 Sobic001G400000--Sobic008G156600 Sobic008G055200 Sobic008G055200 Sobic004G046800--Sobic008G055200 Sobic001G194800 Sobic001G194800 Sobic004G046800--Sobic001G194800 Sobic001G106800 Sobic001G106800 Sobic004G046800--Sobic001G106800 Sobic002G192800 Sobic002G192800 Sobic004G046800--Sobic002G192800 Sobic004G046800--Sobic008G120920 Sobic008G029800 Sobic008G029800 Sobic004G046800--Sobic008G029800 Sobic010G124900 Sobic010G124900 Sobic004G046800--Sobic010G124900 Sobic001G117100 Sobic001G117100 Sobic004G046800--Sobic001G117100 Sobic008G030501 Sobic008G030501 Sobic004G046800--Sobic008G030501 Sobic005G050400--Sobic001G112600 Sobic001G072000 Sobic001G072000 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic009G242200 Sobic009G242200 Sobic005G050400--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic005G050400--Sobic002G170100 Sobic003G441000 Sobic003G441000 Sobic005G050400--Sobic003G441000 Sobic005G050400--Sobic004G007400 Sobic005G144000 Sobic005G144000 Sobic005G050400--Sobic005G144000 Sobic009G163100 Sobic009G163100 Sobic005G050400--Sobic009G163100 Sobic004G145701--Sobic008G030501 Sobic008G095500 Sobic008G095500 Sobic004G145701--Sobic008G095500 Sobic004G145701--Sobic004G046800 Sobic001G518900 Sobic001G518900 Sobic004G145701--Sobic001G518900 Sobic008G071800 Sobic008G071800 Sobic004G145701--Sobic008G071800 Sobic002G176000 Sobic002G176000 Sobic004G145701--Sobic002G176000 Sobic001G364300 Sobic001G364300 Sobic004G145701--Sobic001G364300 Sobic002G226800 Sobic002G226800 Sobic004G145701--Sobic002G226800 Sobic006G170500 Sobic006G170500 Sobic004G145701--Sobic006G170500 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic001G112600--Sobic003G244400 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000 Sobic002G397900 Sobic002G397900 Sobic002G054700--Sobic002G397900 Sobic002G259700 Sobic002G259700 Sobic002G054700--Sobic002G259700 Sobic002G054700--Sobic004G116400 Sobic002G255400 Sobic002G255400 Sobic002G054700--Sobic002G255400 Sobic003G089100 Sobic003G089100 Sobic002G054700--Sobic003G089100 Sobic003G201500 Sobic003G201500 Sobic002G054700--Sobic003G201500 Sobic006G041800 Sobic006G041800 Sobic002G054700--Sobic006G041800 Sobic001G188000 Sobic001G188000 Sobic002G054700--Sobic001G188000 Sobic003G260600 Sobic003G260600 Sobic002G054700--Sobic003G260600 Sobic002G111100 Sobic002G111100 Sobic008G120920--Sobic002G111100 Sobic008G120920--Sobic008G055200 Sobic008G120920--Sobic004G046800 Sobic005G002100 Sobic005G002100 Sobic008G120920--Sobic005G002100 Sobic008G120920--Sobic003G244400 Sobic005G136100 Sobic005G136100 Sobic008G120920--Sobic005G136100 Sobic001G103100 Sobic001G103100 Sobic008G120920--Sobic001G103100 Sobic003G290500 Sobic003G290500 Sobic008G120920--Sobic003G290500 Sobic008G120920--Sobic004G358000 Sobic008G054700--Sobic006G265800 Sobic008G054700--Sobic004G145701 Sobic008G054700--Sobic008G030501 Sobic008G054700--Sobic003G244400 Sobic008G054700--Sobic004G046800 Sobic008G054700--Sobic001G384200 Sobic008G124600 Sobic008G124600 Sobic008G054700--Sobic008G124600 Sobic004G057300 Sobic004G057300 Sobic008G054700--Sobic004G057300 Sobic008G054700--Sobic001G400000 Sobic004G113600--Sobic001G112600 Sobic004G113600--Sobic003G244400 Sobic004G113600--Sobic004G358000 Sobic004G113600--Sobic009G242200 Sobic004G113600--Sobic002G170100 Sobic004G113600--Sobic005G050400 Sobic004G113600--Sobic001G384200 Sobic004G113600--Sobic001G400000 Sobic005G054150 Sobic005G054150 Sobic004G113600--Sobic005G054150
Octagon: transcription factors


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