Gene annotation
Transcriptome id Sobic.009G066200.1
Synonym Sb09g005520
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
uncharacterized protein At4g06744 precursor, putative, expressed
UniProt A0A1Z5R1Y5
Pfam PF13855
Panther DB PTHR32093
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G13340 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os05g08770.1 : uncharacterized protein At4g06744 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a016581 , Zm00025a037054 , Zm00025a035770 , Zm00025a028597 , Zm00025a043105 , Zm00025a023166 , Zm00025a018931 , Zm00025a041768 , Zm00025a024511 , Zm00025a045149
Brachypodium KQK17443 , PNT72312 , KQK07207 , KQK03023 , KQK04276 , KQJ93239 , KQK12721
Barley HORVU6Hr1G019290.3 , HORVU6Hr1G019290.6 , HORVU6Hr1G019290.5 , HORVU6Hr1G019290.4 , HORVU6Hr1G019290.2 , HORVU6Hr1G019290.1 , HORVU7Hr1G096310.2 , HORVU7Hr1G096310.3 , HORVU7Hr1G096310.1 , HORVU3Hr1G051610.2 , HORVU3Hr1G051610.3 , HORVU3Hr1G051610.1 , HORVU3Hr1G051610.4 , HORVU1Hr1G026650.2 , HORVU1Hr1G026650.3 , HORVU1Hr1G026650.1 , HORVU1Hr1G026650.6 , HORVU1Hr1G026650.4 , HORVU1Hr1G026650.5
Wheat TraesCS5A02G436000 , TraesCS3D02G119800 , TraesCS5D02G443700 , TraesCS5B02G439200 , TraesCS6A02G108000 , TraesCS6B02G136600
Populus -


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cDNA sequences
Sobic.009G066200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
2 Sobic.002G322700 expressed protein -
3 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
4 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
5 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
6 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -
7 Sobic.001G433600 - -
8 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
9 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
10 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
11 Sobic.010G153400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
12 Sobic.002G392400 expressed protein -
13 Sobic.001G440000 ras-related protein, putative, expressed K07933: Rab-like protein 3
14 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
15 Sobic.002G108100 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
16 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
17 Sobic.001G188000 SAM-dependent methyltransferase, putative, expressed -
18 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
19 Sobic.006G189000 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
20 Sobic.001G380700 bZIP transcription factor family protein, putative, expressed -


Gene co-expression network
sample Sobic009G066200 Sobic009G066200 Sobic001G131900 Sobic001G131900 Sobic009G066200--Sobic001G131900 Sobic002G322700 Sobic002G322700 Sobic009G066200--Sobic002G322700 Sobic001G309200 Sobic001G309200 Sobic009G066200--Sobic001G309200 Sobic005G045800 Sobic005G045800 Sobic009G066200--Sobic005G045800 Sobic002G348400 Sobic002G348400 Sobic009G066200--Sobic002G348400 Sobic006G265800 Sobic006G265800 Sobic009G066200--Sobic006G265800 Sobic001G433600 Sobic001G433600 Sobic009G066200--Sobic001G433600 Sobic004G298600 Sobic004G298600 Sobic009G066200--Sobic004G298600 Sobic001G385300 Sobic001G385300 Sobic009G066200--Sobic001G385300 Sobic003G293400 Sobic003G293400 Sobic001G131900--Sobic003G293400 Sobic003G352900 Sobic003G352900 Sobic001G131900--Sobic003G352900 Sobic004G038400 Sobic004G038400 Sobic001G131900--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G131900--Sobic001G076600 Sobic001G131900--Sobic001G385300 Sobic001G131900--Sobic005G045800 Sobic001G131900--Sobic004G298600 Sobic002G420100 Sobic002G420100 Sobic001G131900--Sobic002G420100 Sobic007G144100 Sobic007G144100 Sobic001G131900--Sobic007G144100 Sobic010G009700 Sobic010G009700 Sobic002G322700--Sobic010G009700 Sobic002G322700--Sobic005G045800 Sobic007G146200 Sobic007G146200 Sobic002G322700--Sobic007G146200 Sobic002G322700--Sobic001G131900 Sobic008G140600 Sobic008G140600 Sobic002G322700--Sobic008G140600 Sobic002G322700--Sobic001G385300 Sobic007G105700 Sobic007G105700 Sobic002G322700--Sobic007G105700 Sobic002G322700--Sobic009G066200 Sobic008G188800 Sobic008G188800 Sobic002G322700--Sobic008G188800 Sobic001G309200--Sobic002G348400 Sobic001G188000 Sobic001G188000 Sobic001G309200--Sobic001G188000 Sobic003G260600 Sobic003G260600 Sobic001G309200--Sobic003G260600 Sobic001G117900 Sobic001G117900 Sobic001G309200--Sobic001G117900 Sobic001G309200--Sobic009G066200 Sobic002G308000 Sobic002G308000 Sobic001G309200--Sobic002G308000 Sobic002G392400 Sobic002G392400 Sobic001G309200--Sobic002G392400 Sobic010G153400 Sobic010G153400 Sobic001G309200--Sobic010G153400 Sobic007G086600 Sobic007G086600 Sobic001G309200--Sobic007G086600 Sobic005G045800--Sobic003G352900 Sobic003G376900 Sobic003G376900 Sobic005G045800--Sobic003G376900 Sobic005G045800--Sobic001G385300 Sobic002G299500 Sobic002G299500 Sobic005G045800--Sobic002G299500 Sobic005G045800--Sobic001G131900 Sobic003G200000 Sobic003G200000 Sobic005G045800--Sobic003G200000 Sobic008G171900 Sobic008G171900 Sobic005G045800--Sobic008G171900 Sobic009G163100 Sobic009G163100 Sobic005G045800--Sobic009G163100 Sobic005G045800--Sobic007G144100 Sobic002G348400--Sobic010G153400 Sobic002G348400--Sobic002G392400 Sobic002G348400--Sobic007G086600 Sobic002G348400--Sobic001G117900 Sobic001G305900 Sobic001G305900 Sobic002G348400--Sobic001G305900 Sobic002G348400--Sobic001G309200 Sobic001G280500 Sobic001G280500 Sobic002G348400--Sobic001G280500 Sobic003G004800 Sobic003G004800 Sobic002G348400--Sobic003G004800 Sobic002G348400--Sobic001G188000 Sobic001G384200 Sobic001G384200 Sobic006G265800--Sobic001G384200 Sobic006G134500 Sobic006G134500 Sobic006G265800--Sobic006G134500 Sobic001G400000 Sobic001G400000 Sobic006G265800--Sobic001G400000 Sobic006G265800--Sobic009G163100 Sobic009G201000 Sobic009G201000 Sobic006G265800--Sobic009G201000 Sobic003G024100 Sobic003G024100 Sobic006G265800--Sobic003G024100 Sobic008G156600 Sobic008G156600 Sobic006G265800--Sobic008G156600 Sobic003G244400 Sobic003G244400 Sobic006G265800--Sobic003G244400 Sobic008G007600 Sobic008G007600 Sobic006G265800--Sobic008G007600 Sobic001G433600--Sobic001G117900 Sobic001G433600--Sobic002G308000 Sobic005G060100 Sobic005G060100 Sobic001G433600--Sobic005G060100 Sobic001G433600--Sobic007G105700 Sobic009G054400 Sobic009G054400 Sobic001G433600--Sobic009G054400 Sobic001G433600--Sobic004G298600 Sobic007G189100 Sobic007G189100 Sobic001G433600--Sobic007G189100 Sobic001G433600--Sobic001G131900 Sobic001G433600--Sobic007G086600 Sobic004G298600--Sobic001G385300 Sobic004G298600--Sobic001G131900 Sobic004G298600--Sobic003G293400 Sobic004G026600 Sobic004G026600 Sobic004G298600--Sobic004G026600 Sobic004G298600--Sobic005G060100 Sobic001G308500 Sobic001G308500 Sobic004G298600--Sobic001G308500 Sobic004G298600--Sobic001G433600 Sobic004G298600--Sobic007G105700 Sobic004G298600--Sobic003G352900 Sobic001G385300--Sobic003G376900 Sobic001G385300--Sobic002G299500 Sobic001G385300--Sobic003G352900 Sobic001G385300--Sobic009G163100 Sobic001G385300--Sobic008G171900 Sobic001G385300--Sobic005G045800 Sobic007G141600 Sobic007G141600 Sobic001G385300--Sobic007G141600 Sobic005G020600 Sobic005G020600 Sobic001G385300--Sobic005G020600 Sobic001G385300--Sobic004G298600
Octagon: transcription factors


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