Gene annotation
Transcriptome id Sobic.006G095000.2
Synonym Sb06g017980
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5RE47
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF767
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G06000 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os04g36840.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a011221 , Zm00025a056145
Brachypodium PNT61164
Barley HORVU2Hr1G078260.7 , HORVU2Hr1G078260.6 , HORVU2Hr1G078260.5 , HORVU2Hr1G078260.4 , HORVU2Hr1G078260.3 , HORVU2Hr1G078260.2 , HORVU2Hr1G078260.1 , HORVU2Hr1G078260.9 , HORVU2Hr1G078260.8 , HORVU2Hr1G078260.16 , HORVU2Hr1G078260.15 , HORVU2Hr1G078260.14 , HORVU2Hr1G078260.13 , HORVU2Hr1G078260.12 , HORVU2Hr1G078260.11 , HORVU2Hr1G078260.10
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G192900 expressed protein -
3 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
4 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
6 Sobic.001G323400 expressed protein -
7 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
8 Sobic.003G045000 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
9 Sobic.009G120400 methyltransferase, putative, expressed -
10 Sobic.001G361200 expressed protein -
11 Sobic.002G390800 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
12 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
14 Sobic.003G194800 EF hand family protein, putative, expressed -
15 Sobic.001G043200 expressed protein -
16 Sobic.007G186400 resistance protein, putative, expressed -
17 Sobic.007G111300 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
18 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H
19 Sobic.008G085950 - -
20 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase


Gene co-expression network
sample Sobic006G095000 Sobic006G095000 Sobic003G184300 Sobic003G184300 Sobic006G095000--Sobic003G184300 Sobic002G192900 Sobic002G192900 Sobic006G095000--Sobic002G192900 Sobic004G064600 Sobic004G064600 Sobic006G095000--Sobic004G064600 Sobic008G047500 Sobic008G047500 Sobic006G095000--Sobic008G047500 Sobic004G215600 Sobic004G215600 Sobic006G095000--Sobic004G215600 Sobic001G323400 Sobic001G323400 Sobic006G095000--Sobic001G323400 Sobic002G308000 Sobic002G308000 Sobic006G095000--Sobic002G308000 Sobic003G045000 Sobic003G045000 Sobic006G095000--Sobic003G045000 Sobic009G120400 Sobic009G120400 Sobic006G095000--Sobic009G120400 Sobic004G256900 Sobic004G256900 Sobic003G184300--Sobic004G256900 Sobic003G184300--Sobic006G095000 Sobic003G184300--Sobic002G192900 Sobic001G361200 Sobic001G361200 Sobic003G184300--Sobic001G361200 Sobic001G478900 Sobic001G478900 Sobic003G184300--Sobic001G478900 Sobic010G068900 Sobic010G068900 Sobic003G184300--Sobic010G068900 Sobic002G172500 Sobic002G172500 Sobic003G184300--Sobic002G172500 Sobic010G188900 Sobic010G188900 Sobic003G184300--Sobic010G188900 Sobic003G184300--Sobic004G064600 Sobic002G192900--Sobic002G308000 Sobic002G192900--Sobic010G188900 Sobic002G192900--Sobic006G095000 Sobic002G192900--Sobic001G361200 Sobic002G390800 Sobic002G390800 Sobic002G192900--Sobic002G390800 Sobic002G192900--Sobic003G184300 Sobic002G192900--Sobic004G064600 Sobic002G192900--Sobic001G323400 Sobic001G248400 Sobic001G248400 Sobic002G192900--Sobic001G248400 Sobic004G064600--Sobic006G095000 Sobic004G064600--Sobic002G192900 Sobic004G064600--Sobic008G047500 Sobic004G064600--Sobic001G323400 Sobic001G082800 Sobic001G082800 Sobic004G064600--Sobic001G082800 Sobic004G064600--Sobic002G390800 Sobic008G004900 Sobic008G004900 Sobic004G064600--Sobic008G004900 Sobic007G186400 Sobic007G186400 Sobic004G064600--Sobic007G186400 Sobic004G064600--Sobic002G308000 Sobic008G085950 Sobic008G085950 Sobic008G047500--Sobic008G085950 Sobic003G204100 Sobic003G204100 Sobic008G047500--Sobic003G204100 Sobic003G194800 Sobic003G194800 Sobic008G047500--Sobic003G194800 Sobic007G102000 Sobic007G102000 Sobic008G047500--Sobic007G102000 Sobic008G047500--Sobic002G390800 Sobic002G173400 Sobic002G173400 Sobic008G047500--Sobic002G173400 Sobic004G298600 Sobic004G298600 Sobic008G047500--Sobic004G298600 Sobic007G105700 Sobic007G105700 Sobic008G047500--Sobic007G105700 Sobic010G009700 Sobic010G009700 Sobic008G047500--Sobic010G009700 Sobic004G215600--Sobic009G120400 Sobic004G215600--Sobic003G194800 Sobic004G215600--Sobic008G047500 Sobic004G215600--Sobic007G186400 Sobic008G095900 Sobic008G095900 Sobic004G215600--Sobic008G095900 Sobic004G215600--Sobic006G095000 Sobic004G215600--Sobic008G085950 Sobic004G215600--Sobic002G173400 Sobic001G043200 Sobic001G043200 Sobic004G215600--Sobic001G043200 Sobic001G126800 Sobic001G126800 Sobic001G323400--Sobic001G126800 Sobic003G159700 Sobic003G159700 Sobic001G323400--Sobic003G159700 Sobic001G323400--Sobic006G095000 Sobic001G323400--Sobic002G308000 Sobic001G323400--Sobic002G192900 Sobic001G323400--Sobic004G064600 Sobic010G269800 Sobic010G269800 Sobic001G323400--Sobic010G269800 Sobic001G323400--Sobic002G390800 Sobic001G011000 Sobic001G011000 Sobic001G323400--Sobic001G011000 Sobic002G392400 Sobic002G392400 Sobic002G308000--Sobic002G392400 Sobic002G308000--Sobic007G105700 Sobic001G117900 Sobic001G117900 Sobic002G308000--Sobic001G117900 Sobic001G433600 Sobic001G433600 Sobic002G308000--Sobic001G433600 Sobic003G293400 Sobic003G293400 Sobic002G308000--Sobic003G293400 Sobic010G253200 Sobic010G253200 Sobic002G308000--Sobic010G253200 Sobic001G131900 Sobic001G131900 Sobic002G308000--Sobic001G131900 Sobic007G111300 Sobic007G111300 Sobic002G308000--Sobic007G111300 Sobic002G308000--Sobic002G192900 Sobic003G045000--Sobic008G085950 Sobic003G045000--Sobic008G047500 Sobic003G045000--Sobic010G188900 Sobic003G045000--Sobic002G308000 Sobic007G043700 Sobic007G043700 Sobic003G045000--Sobic007G043700 Sobic003G045000--Sobic003G194800 Sobic003G045000--Sobic007G105700 Sobic003G045000--Sobic002G390800 Sobic003G045000--Sobic009G120400 Sobic009G120400--Sobic002G173400 Sobic002G426100 Sobic002G426100 Sobic009G120400--Sobic002G426100 Sobic007G034200 Sobic007G034200 Sobic009G120400--Sobic007G034200 Sobic009G120400--Sobic003G194800 Sobic009G120400--Sobic004G215600 Sobic009G120400--Sobic007G105700 Sobic003G299500 Sobic003G299500 Sobic009G120400--Sobic003G299500 Sobic009G120400--Sobic007G186400 Sobic001G051400 Sobic001G051400 Sobic009G120400--Sobic001G051400
Octagon: transcription factors


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