Gene annotation
Transcriptome id Sobic.003G184300.4,Sobic.003G184300.5,Sobic.003G184300.2,Sobic.003G184300.7,Sobic.003G184300.3,Sobic.003G184300.8,Sobic.003G184300.9,Sobic.003G184300.6
Synonym Sb03g024580
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XMY1 , A0A1W0VXY5 , A0A1W0VXZ3
Pfam PF01535 PF13041 PF13041
Panther DB PTHR24015 PTHR24015:SF775
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40400 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g36610.1 : expressed protein
MaizeGDB (Corn) Zm00025a036450
Brachypodium -
Barley HORVU5Hr1G009510.2 , HORVU5Hr1G009510.3 , HORVU5Hr1G009510.4 , HORVU5Hr1G009510.5 , HORVU5Hr1G009510.1
Wheat TraesCS3D02G203500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
2 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
3 Sobic.002G192900 expressed protein -
4 Sobic.001G361200 expressed protein -
5 Sobic.001G478900 pentatricopeptide, putative, expressed -
6 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
7 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
8 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
9 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
10 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.002G154800 glycosyl transferase, group 1 domain containing protein, expressed -
13 Sobic.001G323400 expressed protein -
14 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.001G486900 exostosin family protein, putative, expressed -
17 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
18 Sobic.003G045000 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
19 Sobic.001G242300 expressed protein -
20 Sobic.003G142400 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G184300 Sobic003G184300 Sobic004G256900 Sobic004G256900 Sobic003G184300--Sobic004G256900 Sobic006G095000 Sobic006G095000 Sobic003G184300--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic003G184300--Sobic002G192900 Sobic001G361200 Sobic001G361200 Sobic003G184300--Sobic001G361200 Sobic001G478900 Sobic001G478900 Sobic003G184300--Sobic001G478900 Sobic010G068900 Sobic010G068900 Sobic003G184300--Sobic010G068900 Sobic002G172500 Sobic002G172500 Sobic003G184300--Sobic002G172500 Sobic010G188900 Sobic010G188900 Sobic003G184300--Sobic010G188900 Sobic004G064600 Sobic004G064600 Sobic003G184300--Sobic004G064600 Sobic004G256900--Sobic003G184300 Sobic004G241000 Sobic004G241000 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic006G069100 Sobic006G069100 Sobic004G256900--Sobic006G069100 Sobic006G262800 Sobic006G262800 Sobic004G256900--Sobic006G262800 Sobic010G190900 Sobic010G190900 Sobic004G256900--Sobic010G190900 Sobic004G256900--Sobic001G478900 Sobic008G163400 Sobic008G163400 Sobic004G256900--Sobic008G163400 Sobic006G095000--Sobic003G184300 Sobic006G095000--Sobic002G192900 Sobic006G095000--Sobic004G064600 Sobic008G047500 Sobic008G047500 Sobic006G095000--Sobic008G047500 Sobic004G215600 Sobic004G215600 Sobic006G095000--Sobic004G215600 Sobic001G323400 Sobic001G323400 Sobic006G095000--Sobic001G323400 Sobic002G308000 Sobic002G308000 Sobic006G095000--Sobic002G308000 Sobic003G045000 Sobic003G045000 Sobic006G095000--Sobic003G045000 Sobic009G120400 Sobic009G120400 Sobic006G095000--Sobic009G120400 Sobic002G192900--Sobic002G308000 Sobic002G192900--Sobic010G188900 Sobic002G192900--Sobic006G095000 Sobic002G192900--Sobic001G361200 Sobic002G390800 Sobic002G390800 Sobic002G192900--Sobic002G390800 Sobic002G192900--Sobic003G184300 Sobic002G192900--Sobic004G064600 Sobic002G192900--Sobic001G323400 Sobic001G248400 Sobic001G248400 Sobic002G192900--Sobic001G248400 Sobic001G361200--Sobic002G192900 Sobic001G154300 Sobic001G154300 Sobic001G361200--Sobic001G154300 Sobic001G361200--Sobic003G184300 Sobic004G328300 Sobic004G328300 Sobic001G361200--Sobic004G328300 Sobic001G296800 Sobic001G296800 Sobic001G361200--Sobic001G296800 Sobic003G315700 Sobic003G315700 Sobic001G361200--Sobic003G315700 Sobic001G361200--Sobic006G095000 Sobic003G411700 Sobic003G411700 Sobic001G361200--Sobic003G411700 Sobic004G306100 Sobic004G306100 Sobic001G361200--Sobic004G306100 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic001G478900--Sobic006G262800 Sobic001G478900--Sobic004G256900 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic010G123100 Sobic010G123100 Sobic001G478900--Sobic010G123100 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic010G068900--Sobic006G262800 Sobic010G068900--Sobic010G190900 Sobic010G068900--Sobic004G241000 Sobic010G068900--Sobic006G069100 Sobic006G085900 Sobic006G085900 Sobic010G068900--Sobic006G085900 Sobic010G068900--Sobic003G184300 Sobic010G068900--Sobic001G478900 Sobic002G172500--Sobic010G068900 Sobic008G082800 Sobic008G082800 Sobic002G172500--Sobic008G082800 Sobic002G172500--Sobic004G256900 Sobic002G172500--Sobic006G262800 Sobic002G172500--Sobic004G241000 Sobic002G172500--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic002G172500--Sobic009G155400 Sobic002G172500--Sobic003G184300 Sobic002G172500--Sobic008G163400 Sobic010G188900--Sobic002G308000 Sobic010G188900--Sobic002G192900 Sobic010G253200 Sobic010G253200 Sobic010G188900--Sobic010G253200 Sobic008G132200 Sobic008G132200 Sobic010G188900--Sobic008G132200 Sobic010G188900--Sobic003G045000 Sobic003G075200 Sobic003G075200 Sobic010G188900--Sobic003G075200 Sobic010G080900 Sobic010G080900 Sobic010G188900--Sobic010G080900 Sobic001G352800 Sobic001G352800 Sobic010G188900--Sobic001G352800 Sobic008G104000 Sobic008G104000 Sobic010G188900--Sobic008G104000 Sobic004G064600--Sobic006G095000 Sobic004G064600--Sobic002G192900 Sobic004G064600--Sobic008G047500 Sobic004G064600--Sobic001G323400 Sobic001G082800 Sobic001G082800 Sobic004G064600--Sobic001G082800 Sobic004G064600--Sobic002G390800 Sobic008G004900 Sobic008G004900 Sobic004G064600--Sobic008G004900 Sobic007G186400 Sobic007G186400 Sobic004G064600--Sobic007G186400 Sobic004G064600--Sobic002G308000
Octagon: transcription factors


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