Gene annotation
Transcriptome id Sobic.004G256900.1
Synonym Sb04g029550
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5RP15
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF560
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G06400 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os12g27060.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021858
Brachypodium KQJ86799
Barley HORVU7Hr1G019730.1 , HORVU7Hr1G019730.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
4 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
5 Sobic.006G069100 pentatricopeptide, putative, expressed -
6 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.010G190900 pentatricopeptide, putative, expressed -
8 Sobic.001G478900 pentatricopeptide, putative, expressed -
9 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
10 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.001G436600 pentatricopeptide, putative, expressed -
12 Sobic.001G242300 expressed protein -
13 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
14 Sobic.008G171500 PPR repeat containing protein, expressed -
15 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
16 Sobic.006G262700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phytosulfokine receptor precursor, putative, expressed -
17 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.006G085900 pentatricopeptide, putative, expressed -
19 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.009G253101 - -


Gene co-expression network
sample Sobic004G256900 Sobic004G256900 Sobic003G184300 Sobic003G184300 Sobic004G256900--Sobic003G184300 Sobic004G241000 Sobic004G241000 Sobic004G256900--Sobic004G241000 Sobic010G068900 Sobic010G068900 Sobic004G256900--Sobic010G068900 Sobic002G172500 Sobic002G172500 Sobic004G256900--Sobic002G172500 Sobic006G069100 Sobic006G069100 Sobic004G256900--Sobic006G069100 Sobic006G262800 Sobic006G262800 Sobic004G256900--Sobic006G262800 Sobic010G190900 Sobic010G190900 Sobic004G256900--Sobic010G190900 Sobic001G478900 Sobic001G478900 Sobic004G256900--Sobic001G478900 Sobic008G163400 Sobic008G163400 Sobic004G256900--Sobic008G163400 Sobic003G184300--Sobic004G256900 Sobic006G095000 Sobic006G095000 Sobic003G184300--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic003G184300--Sobic002G192900 Sobic001G361200 Sobic001G361200 Sobic003G184300--Sobic001G361200 Sobic003G184300--Sobic001G478900 Sobic003G184300--Sobic010G068900 Sobic003G184300--Sobic002G172500 Sobic010G188900 Sobic010G188900 Sobic003G184300--Sobic010G188900 Sobic004G064600 Sobic004G064600 Sobic003G184300--Sobic004G064600 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic003G239000 Sobic003G239000 Sobic004G241000--Sobic003G239000 Sobic006G085900 Sobic006G085900 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic009G155400 Sobic009G155400 Sobic004G241000--Sobic009G155400 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic010G068900--Sobic006G262800 Sobic010G068900--Sobic010G190900 Sobic010G068900--Sobic004G241000 Sobic010G068900--Sobic006G069100 Sobic010G068900--Sobic006G085900 Sobic010G068900--Sobic003G184300 Sobic010G068900--Sobic001G478900 Sobic002G172500--Sobic010G068900 Sobic008G082800 Sobic008G082800 Sobic002G172500--Sobic008G082800 Sobic002G172500--Sobic004G256900 Sobic002G172500--Sobic006G262800 Sobic002G172500--Sobic004G241000 Sobic002G172500--Sobic006G085900 Sobic002G172500--Sobic009G155400 Sobic002G172500--Sobic003G184300 Sobic002G172500--Sobic008G163400 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic006G262800--Sobic010G068900 Sobic009G154900 Sobic009G154900 Sobic006G262800--Sobic009G154900 Sobic006G262800--Sobic001G478900 Sobic006G262800--Sobic004G256900 Sobic006G262800--Sobic002G172500 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic001G268300 Sobic001G268300 Sobic006G262800--Sobic001G268300 Sobic006G262800--Sobic004G241000 Sobic010G190900--Sobic010G068900 Sobic010G190900--Sobic004G241000 Sobic010G190900--Sobic006G069100 Sobic010G190900--Sobic004G256900 Sobic009G253101 Sobic009G253101 Sobic010G190900--Sobic009G253101 Sobic010G190900--Sobic009G116400 Sobic010G190900--Sobic009G155400 Sobic007G087900 Sobic007G087900 Sobic010G190900--Sobic007G087900 Sobic010G190900--Sobic002G172500 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic001G478900--Sobic006G262800 Sobic001G478900--Sobic004G256900 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic001G478900--Sobic010G068900 Sobic001G478900--Sobic009G253101 Sobic010G123100 Sobic010G123100 Sobic001G478900--Sobic010G123100 Sobic008G163400--Sobic003G239000 Sobic008G163400--Sobic004G241000 Sobic008G163400--Sobic009G155400 Sobic008G163400--Sobic009G116400 Sobic008G163400--Sobic004G256900 Sobic008G163400--Sobic006G262800 Sobic001G122200 Sobic001G122200 Sobic008G163400--Sobic001G122200 Sobic002G267600 Sobic002G267600 Sobic008G163400--Sobic002G267600 Sobic001G149100 Sobic001G149100 Sobic008G163400--Sobic001G149100
Octagon: transcription factors


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