Gene annotation
Transcriptome id Sobic.006G085800.1
Synonym Sb06g017170
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5Y8R2
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF900
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G13600 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os04g35610.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a030836 , Zm00025a056100
Brachypodium KQK04628 , KQJ82714 , KQK04630
Barley HORVU4Hr1G064880.1 , HORVU4Hr1G064880.2 , HORVU2Hr1G076390.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G436600 pentatricopeptide, putative, expressed -
2 Sobic.001G478900 pentatricopeptide, putative, expressed -
3 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
4 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
5 Sobic.006G085900 pentatricopeptide, putative, expressed -
6 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
7 Sobic.010G190900 pentatricopeptide, putative, expressed -
8 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G033600 pentatricopeptide, putative, expressed -
11 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
14 Sobic.004G030600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
16 Sobic.009G253101 - -
17 Sobic.001G292800 pentatricopeptide, putative, expressed -
18 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.003G359400 PPR repeat containing protein, expressed -
20 Sobic.006G262700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phytosulfokine receptor precursor, putative, expressed -


Gene co-expression network
sample Sobic006G085800 Sobic006G085800 Sobic001G436600 Sobic001G436600 Sobic006G085800--Sobic001G436600 Sobic001G478900 Sobic001G478900 Sobic006G085800--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic006G085800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G085800--Sobic002G172500 Sobic006G085900 Sobic006G085900 Sobic006G085800--Sobic006G085900 Sobic010G068900 Sobic010G068900 Sobic006G085800--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G085800--Sobic010G190900 Sobic006G262800 Sobic006G262800 Sobic006G085800--Sobic006G262800 Sobic006G095000 Sobic006G095000 Sobic006G085800--Sobic006G095000 Sobic001G436600--Sobic004G256900 Sobic001G436600--Sobic006G085900 Sobic001G436600--Sobic006G262800 Sobic009G154900 Sobic009G154900 Sobic001G436600--Sobic009G154900 Sobic004G241000 Sobic004G241000 Sobic001G436600--Sobic004G241000 Sobic001G436600--Sobic006G085800 Sobic001G436600--Sobic010G068900 Sobic004G215600 Sobic004G215600 Sobic001G436600--Sobic004G215600 Sobic001G436600--Sobic006G095000 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic001G478900--Sobic006G262800 Sobic001G478900--Sobic004G256900 Sobic003G184300 Sobic003G184300 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic010G123100 Sobic010G123100 Sobic001G478900--Sobic010G123100 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic006G069100 Sobic006G069100 Sobic004G256900--Sobic006G069100 Sobic004G256900--Sobic006G262800 Sobic004G256900--Sobic010G190900 Sobic004G256900--Sobic001G478900 Sobic008G163400 Sobic008G163400 Sobic004G256900--Sobic008G163400 Sobic002G172500--Sobic010G068900 Sobic008G082800 Sobic008G082800 Sobic002G172500--Sobic008G082800 Sobic002G172500--Sobic004G256900 Sobic002G172500--Sobic006G262800 Sobic002G172500--Sobic004G241000 Sobic002G172500--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic002G172500--Sobic009G155400 Sobic002G172500--Sobic003G184300 Sobic002G172500--Sobic008G163400 Sobic006G085900--Sobic004G241000 Sobic006G085900--Sobic010G068900 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic006G085900--Sobic002G172500 Sobic008G099900 Sobic008G099900 Sobic006G085900--Sobic008G099900 Sobic002G084400 Sobic002G084400 Sobic006G085900--Sobic002G084400 Sobic006G085900--Sobic001G436600 Sobic005G210700 Sobic005G210700 Sobic006G085900--Sobic005G210700 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic010G068900--Sobic006G262800 Sobic010G068900--Sobic010G190900 Sobic010G068900--Sobic004G241000 Sobic010G068900--Sobic006G069100 Sobic010G068900--Sobic006G085900 Sobic010G068900--Sobic003G184300 Sobic010G068900--Sobic001G478900 Sobic010G190900--Sobic010G068900 Sobic010G190900--Sobic004G241000 Sobic010G190900--Sobic006G069100 Sobic010G190900--Sobic004G256900 Sobic010G190900--Sobic009G253101 Sobic009G116400 Sobic009G116400 Sobic010G190900--Sobic009G116400 Sobic010G190900--Sobic009G155400 Sobic007G087900 Sobic007G087900 Sobic010G190900--Sobic007G087900 Sobic010G190900--Sobic002G172500 Sobic006G262800--Sobic010G068900 Sobic006G262800--Sobic009G154900 Sobic006G262800--Sobic001G478900 Sobic006G262800--Sobic004G256900 Sobic006G262800--Sobic002G172500 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic001G268300 Sobic001G268300 Sobic006G262800--Sobic001G268300 Sobic006G262800--Sobic004G241000 Sobic006G095000--Sobic003G184300 Sobic002G192900 Sobic002G192900 Sobic006G095000--Sobic002G192900 Sobic004G064600 Sobic004G064600 Sobic006G095000--Sobic004G064600 Sobic008G047500 Sobic008G047500 Sobic006G095000--Sobic008G047500 Sobic006G095000--Sobic004G215600 Sobic001G323400 Sobic001G323400 Sobic006G095000--Sobic001G323400 Sobic002G308000 Sobic002G308000 Sobic006G095000--Sobic002G308000 Sobic003G045000 Sobic003G045000 Sobic006G095000--Sobic003G045000 Sobic009G120400 Sobic009G120400 Sobic006G095000--Sobic009G120400
Octagon: transcription factors


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