Gene annotation
Transcriptome id Sobic.010G190900.1
Synonym Sb10g024090
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A194YK45
Pfam PF14432 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF76
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13770 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g41040.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a051564
Brachypodium KQK17674
Barley HORVU7Hr1G094640.58 , HORVU7Hr1G094640.59 , HORVU7Hr1G094640.57 , HORVU7Hr1G094640.69 , HORVU7Hr1G094640.68 , HORVU7Hr1G094640.65 , HORVU7Hr1G094640.67 , HORVU7Hr1G094640.66 , HORVU7Hr1G094640.61 , HORVU7Hr1G094640.60 , HORVU7Hr1G094640.62 , HORVU7Hr1G094640.70 , HORVU7Hr1G094640.77 , HORVU7Hr1G094640.75 , HORVU7Hr1G094640.78 , HORVU7Hr1G094640.79 , HORVU7Hr1G094640.83 , HORVU7Hr1G094640.82 , HORVU7Hr1G094640.81 , HORVU7Hr1G094640.80 , HORVU7Hr1G094640.72 , HORVU7Hr1G094640.73 , HORVU7Hr1G094640.71 , HORVU7Hr1G094640.76 , HORVU7Hr1G094640.74
Wheat TraesCS7D02G397400 , TraesCS7B02G303600 , TraesCS7A02G404000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
2 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.006G069100 pentatricopeptide, putative, expressed -
4 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
5 Sobic.009G253101 - -
6 Sobic.009G116400 pentatricopeptide, putative, expressed -
7 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.007G087900 Rf1, mitochondrial precursor, putative, expressed -
9 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
10 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
11 Sobic.006G262700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phytosulfokine receptor precursor, putative, expressed -
12 Sobic.006G085900 pentatricopeptide, putative, expressed -
13 Sobic.001G242300 expressed protein -
14 Sobic.001G478900 pentatricopeptide, putative, expressed -
15 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
18 Sobic.001G436600 pentatricopeptide, putative, expressed -
19 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic010G190900 Sobic010G190900 Sobic010G068900 Sobic010G068900 Sobic010G190900--Sobic010G068900 Sobic004G241000 Sobic004G241000 Sobic010G190900--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic010G190900--Sobic006G069100 Sobic004G256900 Sobic004G256900 Sobic010G190900--Sobic004G256900 Sobic009G253101 Sobic009G253101 Sobic010G190900--Sobic009G253101 Sobic009G116400 Sobic009G116400 Sobic010G190900--Sobic009G116400 Sobic009G155400 Sobic009G155400 Sobic010G190900--Sobic009G155400 Sobic007G087900 Sobic007G087900 Sobic010G190900--Sobic007G087900 Sobic002G172500 Sobic002G172500 Sobic010G190900--Sobic002G172500 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic010G068900--Sobic006G262800 Sobic010G068900--Sobic010G190900 Sobic010G068900--Sobic004G241000 Sobic010G068900--Sobic006G069100 Sobic006G085900 Sobic006G085900 Sobic010G068900--Sobic006G085900 Sobic003G184300 Sobic003G184300 Sobic010G068900--Sobic003G184300 Sobic001G478900 Sobic001G478900 Sobic010G068900--Sobic001G478900 Sobic008G163400 Sobic008G163400 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic003G239000 Sobic003G239000 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic004G256900--Sobic006G069100 Sobic004G256900--Sobic006G262800 Sobic004G256900--Sobic010G190900 Sobic004G256900--Sobic001G478900 Sobic004G256900--Sobic008G163400 Sobic009G253101--Sobic010G190900 Sobic009G253101--Sobic001G478900 Sobic009G253101--Sobic010G068900 Sobic009G253101--Sobic004G241000 Sobic009G253101--Sobic004G256900 Sobic009G253101--Sobic006G262800 Sobic006G262700 Sobic006G262700 Sobic009G253101--Sobic006G262700 Sobic009G253101--Sobic002G172500 Sobic009G253101--Sobic006G085900 Sobic009G116400--Sobic009G155400 Sobic009G116400--Sobic006G262700 Sobic009G116400--Sobic008G163400 Sobic009G116400--Sobic010G190900 Sobic009G116400--Sobic007G087900 Sobic009G116400--Sobic006G069100 Sobic005G210700 Sobic005G210700 Sobic009G116400--Sobic005G210700 Sobic004G346200 Sobic004G346200 Sobic009G116400--Sobic004G346200 Sobic009G116400--Sobic004G241000 Sobic009G155400--Sobic009G116400 Sobic009G155400--Sobic008G163400 Sobic009G155400--Sobic004G241000 Sobic009G155400--Sobic006G085900 Sobic004G217900 Sobic004G217900 Sobic009G155400--Sobic004G217900 Sobic009G155400--Sobic006G069100 Sobic009G155400--Sobic002G172500 Sobic009G155400--Sobic006G262700 Sobic009G155400--Sobic005G210700 Sobic007G087900--Sobic009G116400 Sobic007G087900--Sobic006G069100 Sobic007G087900--Sobic010G190900 Sobic007G087900--Sobic010G068900 Sobic007G087900--Sobic006G262700 Sobic007G087900--Sobic006G085900 Sobic007G087900--Sobic004G241000 Sobic007G087900--Sobic006G262800 Sobic007G087900--Sobic004G256900 Sobic002G172500--Sobic010G068900 Sobic008G082800 Sobic008G082800 Sobic002G172500--Sobic008G082800 Sobic002G172500--Sobic004G256900 Sobic002G172500--Sobic006G262800 Sobic002G172500--Sobic004G241000 Sobic002G172500--Sobic006G085900 Sobic002G172500--Sobic009G155400 Sobic002G172500--Sobic003G184300 Sobic002G172500--Sobic008G163400
Octagon: transcription factors


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