Gene annotation
Transcriptome id Sobic.009G116400.5,Sobic.009G116400.4,Sobic.009G116400.6
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1Z5R361
Pfam PF13041 PF01535 PF14432
Panther DB PTHR24015 PTHR24015:SF157
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G20230 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os05g30710.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a043318
Brachypodium KQK06649
Barley HORVU1Hr1G058280.10 , HORVU1Hr1G058280.11 , HORVU1Hr1G058280.4 , HORVU1Hr1G058280.5 , HORVU1Hr1G058280.6 , HORVU1Hr1G058280.7 , HORVU1Hr1G058280.1 , HORVU1Hr1G058280.2 , HORVU1Hr1G058280.3 , HORVU1Hr1G058280.8 , HORVU1Hr1G058280.9
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.006G262700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phytosulfokine receptor precursor, putative, expressed -
3 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
4 Sobic.010G190900 pentatricopeptide, putative, expressed -
5 Sobic.007G087900 Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.006G069100 pentatricopeptide, putative, expressed -
7 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.004G346200 tetratricopeptide-like helical, putative, expressed -
9 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.006G085900 pentatricopeptide, putative, expressed -
11 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
12 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
14 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
16 Sobic.008G039000 expressed protein -
17 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
18 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
19 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
20 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase


Gene co-expression network
sample Sobic009G116400 Sobic009G116400 Sobic009G155400 Sobic009G155400 Sobic009G116400--Sobic009G155400 Sobic006G262700 Sobic006G262700 Sobic009G116400--Sobic006G262700 Sobic008G163400 Sobic008G163400 Sobic009G116400--Sobic008G163400 Sobic010G190900 Sobic010G190900 Sobic009G116400--Sobic010G190900 Sobic007G087900 Sobic007G087900 Sobic009G116400--Sobic007G087900 Sobic006G069100 Sobic006G069100 Sobic009G116400--Sobic006G069100 Sobic005G210700 Sobic005G210700 Sobic009G116400--Sobic005G210700 Sobic004G346200 Sobic004G346200 Sobic009G116400--Sobic004G346200 Sobic004G241000 Sobic004G241000 Sobic009G116400--Sobic004G241000 Sobic009G155400--Sobic009G116400 Sobic009G155400--Sobic008G163400 Sobic009G155400--Sobic004G241000 Sobic006G085900 Sobic006G085900 Sobic009G155400--Sobic006G085900 Sobic004G217900 Sobic004G217900 Sobic009G155400--Sobic004G217900 Sobic009G155400--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic009G155400--Sobic002G172500 Sobic009G155400--Sobic006G262700 Sobic009G155400--Sobic005G210700 Sobic006G262700--Sobic009G116400 Sobic001G242300 Sobic001G242300 Sobic006G262700--Sobic001G242300 Sobic006G262700--Sobic009G155400 Sobic006G262700--Sobic008G163400 Sobic004G256900 Sobic004G256900 Sobic006G262700--Sobic004G256900 Sobic010G068900 Sobic010G068900 Sobic006G262700--Sobic010G068900 Sobic006G262700--Sobic010G190900 Sobic006G262700--Sobic004G241000 Sobic006G262700--Sobic007G087900 Sobic003G239000 Sobic003G239000 Sobic008G163400--Sobic003G239000 Sobic008G163400--Sobic004G241000 Sobic008G163400--Sobic009G155400 Sobic008G163400--Sobic009G116400 Sobic008G163400--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic008G163400--Sobic006G262800 Sobic001G122200 Sobic001G122200 Sobic008G163400--Sobic001G122200 Sobic002G267600 Sobic002G267600 Sobic008G163400--Sobic002G267600 Sobic001G149100 Sobic001G149100 Sobic008G163400--Sobic001G149100 Sobic010G190900--Sobic010G068900 Sobic010G190900--Sobic004G241000 Sobic010G190900--Sobic006G069100 Sobic010G190900--Sobic004G256900 Sobic009G253101 Sobic009G253101 Sobic010G190900--Sobic009G253101 Sobic010G190900--Sobic009G116400 Sobic010G190900--Sobic009G155400 Sobic010G190900--Sobic007G087900 Sobic010G190900--Sobic002G172500 Sobic007G087900--Sobic009G116400 Sobic007G087900--Sobic006G069100 Sobic007G087900--Sobic010G190900 Sobic007G087900--Sobic010G068900 Sobic007G087900--Sobic006G262700 Sobic007G087900--Sobic006G085900 Sobic007G087900--Sobic004G241000 Sobic007G087900--Sobic006G262800 Sobic007G087900--Sobic004G256900 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic008G099900 Sobic008G099900 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic005G210700--Sobic009G116400 Sobic005G210700--Sobic006G085900 Sobic007G179600 Sobic007G179600 Sobic005G210700--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic005G210700--Sobic001G347100 Sobic008G066900 Sobic008G066900 Sobic005G210700--Sobic008G066900 Sobic005G210700--Sobic006G069100 Sobic005G011000 Sobic005G011000 Sobic005G210700--Sobic005G011000 Sobic004G346200--Sobic009G116400 Sobic004G346200--Sobic006G085900 Sobic004G346200--Sobic009G155400 Sobic004G346200--Sobic007G087900 Sobic008G082800 Sobic008G082800 Sobic004G346200--Sobic008G082800 Sobic004G346200--Sobic010G190900 Sobic004G346200--Sobic005G210700 Sobic006G033380 Sobic006G033380 Sobic004G346200--Sobic006G033380 Sobic004G346200--Sobic006G262700 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400
Octagon: transcription factors


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