Gene annotation
Transcriptome id Sobic.005G210700.1
Synonym Sb05g026370
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1Z5RK85
Pfam PF13812 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF456
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09190 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os11g44930.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a029155
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.009G116400 pentatricopeptide, putative, expressed -
4 Sobic.006G085900 pentatricopeptide, putative, expressed -
5 Sobic.007G179600 pentatricopeptide, putative, expressed -
6 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
7 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.006G069100 pentatricopeptide, putative, expressed -
9 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
10 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
11 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
12 Sobic.006G109400 pentatricopeptide, putative, expressed -
13 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
14 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
16 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
17 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
18 Sobic.001G391101 - -
19 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
20 Sobic.009G253200 RNA polymerase sigma factor, putative, expressed -


Gene co-expression network
sample Sobic005G210700 Sobic005G210700 Sobic008G099900 Sobic008G099900 Sobic005G210700--Sobic008G099900 Sobic009G155400 Sobic009G155400 Sobic005G210700--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic005G210700--Sobic009G116400 Sobic006G085900 Sobic006G085900 Sobic005G210700--Sobic006G085900 Sobic007G179600 Sobic007G179600 Sobic005G210700--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic005G210700--Sobic001G347100 Sobic008G066900 Sobic008G066900 Sobic005G210700--Sobic008G066900 Sobic006G069100 Sobic006G069100 Sobic005G210700--Sobic006G069100 Sobic005G011000 Sobic005G011000 Sobic005G210700--Sobic005G011000 Sobic008G099900--Sobic005G210700 Sobic008G099900--Sobic006G085900 Sobic008G099900--Sobic009G155400 Sobic002G251800 Sobic002G251800 Sobic008G099900--Sobic002G251800 Sobic004G217900 Sobic004G217900 Sobic008G099900--Sobic004G217900 Sobic006G109400 Sobic006G109400 Sobic008G099900--Sobic006G109400 Sobic008G099900--Sobic009G116400 Sobic008G099900--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic008G099900--Sobic006G271900 Sobic009G155400--Sobic009G116400 Sobic008G163400 Sobic008G163400 Sobic009G155400--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic009G155400--Sobic004G241000 Sobic009G155400--Sobic006G085900 Sobic009G155400--Sobic004G217900 Sobic009G155400--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic009G155400--Sobic002G172500 Sobic006G262700 Sobic006G262700 Sobic009G155400--Sobic006G262700 Sobic009G155400--Sobic005G210700 Sobic009G116400--Sobic009G155400 Sobic009G116400--Sobic006G262700 Sobic009G116400--Sobic008G163400 Sobic010G190900 Sobic010G190900 Sobic009G116400--Sobic010G190900 Sobic007G087900 Sobic007G087900 Sobic009G116400--Sobic007G087900 Sobic009G116400--Sobic006G069100 Sobic009G116400--Sobic005G210700 Sobic004G346200 Sobic004G346200 Sobic009G116400--Sobic004G346200 Sobic009G116400--Sobic004G241000 Sobic006G085900--Sobic004G241000 Sobic010G068900 Sobic010G068900 Sobic006G085900--Sobic010G068900 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic006G085900--Sobic002G172500 Sobic006G085900--Sobic008G099900 Sobic002G084400 Sobic002G084400 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic006G085900--Sobic005G210700 Sobic001G081300 Sobic001G081300 Sobic007G179600--Sobic001G081300 Sobic007G179600--Sobic001G347100 Sobic003G419800 Sobic003G419800 Sobic007G179600--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic007G179600--Sobic001G391101 Sobic007G179600--Sobic005G210700 Sobic009G238700 Sobic009G238700 Sobic007G179600--Sobic009G238700 Sobic007G179600--Sobic008G066900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic001G149100 Sobic001G149100 Sobic001G347100--Sobic001G149100 Sobic001G347100--Sobic001G391101 Sobic001G347100--Sobic001G081300 Sobic001G347100--Sobic009G238700 Sobic001G347100--Sobic007G179600 Sobic003G299200 Sobic003G299200 Sobic001G347100--Sobic003G299200 Sobic001G347100--Sobic004G241000 Sobic001G347100--Sobic006G069100 Sobic001G347100--Sobic009G155400 Sobic008G066900--Sobic005G210700 Sobic008G066900--Sobic007G179600 Sobic003G239000 Sobic003G239000 Sobic008G066900--Sobic003G239000 Sobic008G066900--Sobic008G099900 Sobic003G051500 Sobic003G051500 Sobic008G066900--Sobic003G051500 Sobic008G066900--Sobic006G085900 Sobic008G066900--Sobic009G155400 Sobic008G066900--Sobic001G391101 Sobic010G256000 Sobic010G256000 Sobic008G066900--Sobic010G256000 Sobic006G069100--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic005G011000--Sobic006G271900 Sobic005G011000--Sobic009G116400 Sobic004G036700 Sobic004G036700 Sobic005G011000--Sobic004G036700 Sobic005G011000--Sobic001G347100 Sobic005G011000--Sobic005G210700 Sobic001G187800 Sobic001G187800 Sobic005G011000--Sobic001G187800 Sobic005G011000--Sobic003G419800 Sobic002G389200 Sobic002G389200 Sobic005G011000--Sobic002G389200 Sobic005G028300 Sobic005G028300 Sobic005G011000--Sobic005G028300
Octagon: transcription factors


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