Gene annotation
Transcriptome id Sobic.007G179600.1
Synonym Sb07g025050
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6PIM7
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF756
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13880 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g62400.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a026536 , Zm00025a034203
Brachypodium KQK12215
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
3 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
4 Sobic.001G391101 - -
5 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
6 Sobic.009G238700 EMB2744, putative, expressed -
7 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
9 Sobic.007G210801 - K10277: KDM8, lysine-specific demethylase 8
10 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
11 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
12 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
14 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
15 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
17 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
18 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.001G049800 DDT domain containing protein, putative, expressed -
20 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -


Gene co-expression network
sample Sobic007G179600 Sobic007G179600 Sobic001G081300 Sobic001G081300 Sobic007G179600--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic007G179600--Sobic001G347100 Sobic003G419800 Sobic003G419800 Sobic007G179600--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic007G179600--Sobic001G391101 Sobic005G210700 Sobic005G210700 Sobic007G179600--Sobic005G210700 Sobic009G238700 Sobic009G238700 Sobic007G179600--Sobic009G238700 Sobic008G066900 Sobic008G066900 Sobic007G179600--Sobic008G066900 Sobic008G099900 Sobic008G099900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic001G081300--Sobic001G391101 Sobic001G081300--Sobic007G179600 Sobic001G081300--Sobic001G347100 Sobic001G081300--Sobic009G238700 Sobic003G051500 Sobic003G051500 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic007G060600 Sobic007G060600 Sobic001G081300--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic001G081300--Sobic001G049800 Sobic010G099300 Sobic010G099300 Sobic001G081300--Sobic010G099300 Sobic001G149100 Sobic001G149100 Sobic001G347100--Sobic001G149100 Sobic001G347100--Sobic001G391101 Sobic001G347100--Sobic001G081300 Sobic001G347100--Sobic009G238700 Sobic001G347100--Sobic007G179600 Sobic003G299200 Sobic003G299200 Sobic001G347100--Sobic003G299200 Sobic004G241000 Sobic004G241000 Sobic001G347100--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic001G347100--Sobic006G069100 Sobic009G155400 Sobic009G155400 Sobic001G347100--Sobic009G155400 Sobic005G028300 Sobic005G028300 Sobic003G419800--Sobic005G028300 Sobic001G001200 Sobic001G001200 Sobic003G419800--Sobic001G001200 Sobic003G419800--Sobic007G179600 Sobic003G419800--Sobic001G081300 Sobic003G419800--Sobic003G051500 Sobic003G419800--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic003G419800--Sobic001G390900 Sobic003G014700 Sobic003G014700 Sobic003G419800--Sobic003G014700 Sobic007G182600 Sobic007G182600 Sobic003G419800--Sobic007G182600 Sobic001G391101--Sobic001G081300 Sobic001G391101--Sobic001G347100 Sobic001G391101--Sobic003G051500 Sobic001G391101--Sobic005G028300 Sobic001G391101--Sobic007G179600 Sobic001G391101--Sobic003G419800 Sobic001G391101--Sobic003G014700 Sobic001G391101--Sobic001G001200 Sobic001G391101--Sobic004G241000 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic005G210700--Sobic009G116400 Sobic006G085900 Sobic006G085900 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic005G210700--Sobic001G347100 Sobic005G210700--Sobic008G066900 Sobic005G210700--Sobic006G069100 Sobic005G011000 Sobic005G011000 Sobic005G210700--Sobic005G011000 Sobic009G238700--Sobic007G060600 Sobic009G238700--Sobic001G081300 Sobic009G238700--Sobic001G347100 Sobic001G040600 Sobic001G040600 Sobic009G238700--Sobic001G040600 Sobic009G238700--Sobic001G049800 Sobic009G238700--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic009G238700--Sobic006G271900 Sobic009G238700--Sobic003G299200 Sobic003G352100 Sobic003G352100 Sobic009G238700--Sobic003G352100 Sobic008G066900--Sobic005G210700 Sobic008G066900--Sobic007G179600 Sobic003G239000 Sobic003G239000 Sobic008G066900--Sobic003G239000 Sobic008G066900--Sobic008G099900 Sobic008G066900--Sobic003G051500 Sobic008G066900--Sobic006G085900 Sobic008G066900--Sobic009G155400 Sobic008G066900--Sobic001G391101 Sobic010G256000 Sobic010G256000 Sobic008G066900--Sobic010G256000 Sobic008G099900--Sobic005G210700 Sobic008G099900--Sobic006G085900 Sobic008G099900--Sobic009G155400 Sobic002G251800 Sobic002G251800 Sobic008G099900--Sobic002G251800 Sobic004G217900 Sobic004G217900 Sobic008G099900--Sobic004G217900 Sobic006G109400 Sobic006G109400 Sobic008G099900--Sobic006G109400 Sobic008G099900--Sobic009G116400 Sobic008G099900--Sobic007G179600 Sobic008G099900--Sobic006G271900 Sobic007G210801--Sobic007G179600 Sobic007G210801--Sobic001G391101 Sobic007G210801--Sobic003G419800 Sobic007G210801--Sobic001G347100 Sobic007G210801--Sobic001G081300 Sobic003G128000 Sobic003G128000 Sobic007G210801--Sobic003G128000 Sobic007G210801--Sobic001G001200 Sobic007G210801--Sobic005G210700 Sobic007G210801--Sobic005G028300
Octagon: transcription factors


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