Gene annotation
Transcriptome id Sobic.002G389200.1,Sobic.002G389200.2,Sobic.002G389200.6,Sobic.002G389200.3,Sobic.002G389200.4,Sobic.002G389200.5
Synonym Sb02g040530, OTP84
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt C5X3A5
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF70
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57430 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g44170.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
2 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.002G240900 pentatricopeptide, putative, expressed -
4 Sobic.006G069100 pentatricopeptide, putative, expressed -
5 Sobic.006G085900 pentatricopeptide, putative, expressed -
6 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
7 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
8 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
9 Sobic.007G179600 pentatricopeptide, putative, expressed -
10 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.009G116400 pentatricopeptide, putative, expressed -
14 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
15 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.010G256000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.007G087900 Rf1, mitochondrial precursor, putative, expressed -
18 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
20 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P


Gene co-expression network
sample Sobic002G389200 Sobic002G389200 Sobic005G028300 Sobic005G028300 Sobic002G389200--Sobic005G028300 Sobic009G155400 Sobic009G155400 Sobic002G389200--Sobic009G155400 Sobic002G240900 Sobic002G240900 Sobic002G389200--Sobic002G240900 Sobic006G069100 Sobic006G069100 Sobic002G389200--Sobic006G069100 Sobic006G085900 Sobic006G085900 Sobic002G389200--Sobic006G085900 Sobic003G419800 Sobic003G419800 Sobic002G389200--Sobic003G419800 Sobic002G251800 Sobic002G251800 Sobic002G389200--Sobic002G251800 Sobic005G011000 Sobic005G011000 Sobic002G389200--Sobic005G011000 Sobic007G179600 Sobic007G179600 Sobic002G389200--Sobic007G179600 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic009G116400 Sobic009G116400 Sobic009G155400--Sobic009G116400 Sobic008G163400 Sobic008G163400 Sobic009G155400--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic009G155400--Sobic004G241000 Sobic009G155400--Sobic006G085900 Sobic004G217900 Sobic004G217900 Sobic009G155400--Sobic004G217900 Sobic009G155400--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic009G155400--Sobic002G172500 Sobic006G262700 Sobic006G262700 Sobic009G155400--Sobic006G262700 Sobic005G210700 Sobic005G210700 Sobic009G155400--Sobic005G210700 Sobic001G149100 Sobic001G149100 Sobic002G240900--Sobic001G149100 Sobic002G240900--Sobic003G419800 Sobic002G240900--Sobic002G389200 Sobic003G014766 Sobic003G014766 Sobic002G240900--Sobic003G014766 Sobic005G059400 Sobic005G059400 Sobic002G240900--Sobic005G059400 Sobic002G240900--Sobic003G051500 Sobic002G240900--Sobic001G001200 Sobic002G240900--Sobic005G028300 Sobic001G390900 Sobic001G390900 Sobic002G240900--Sobic001G390900 Sobic006G069100--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic006G069100--Sobic004G256900 Sobic010G068900 Sobic010G068900 Sobic006G069100--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic006G085900--Sobic004G241000 Sobic006G085900--Sobic010G068900 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic006G085900--Sobic002G172500 Sobic008G099900 Sobic008G099900 Sobic006G085900--Sobic008G099900 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic006G085900--Sobic005G210700 Sobic003G419800--Sobic005G028300 Sobic003G419800--Sobic001G001200 Sobic003G419800--Sobic007G179600 Sobic001G081300 Sobic001G081300 Sobic003G419800--Sobic001G081300 Sobic003G419800--Sobic003G051500 Sobic003G419800--Sobic001G391101 Sobic003G419800--Sobic001G390900 Sobic003G419800--Sobic003G014700 Sobic007G182600 Sobic007G182600 Sobic003G419800--Sobic007G182600 Sobic002G251800--Sobic005G028300 Sobic007G038700 Sobic007G038700 Sobic002G251800--Sobic007G038700 Sobic002G251800--Sobic002G084400 Sobic006G271900 Sobic006G271900 Sobic002G251800--Sobic006G271900 Sobic001G040600 Sobic001G040600 Sobic002G251800--Sobic001G040600 Sobic002G251800--Sobic008G099900 Sobic002G251800--Sobic006G085900 Sobic007G060600 Sobic007G060600 Sobic002G251800--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic002G251800--Sobic001G049800 Sobic005G011000--Sobic006G271900 Sobic005G011000--Sobic009G116400 Sobic004G036700 Sobic004G036700 Sobic005G011000--Sobic004G036700 Sobic001G347100 Sobic001G347100 Sobic005G011000--Sobic001G347100 Sobic005G011000--Sobic005G210700 Sobic001G187800 Sobic001G187800 Sobic005G011000--Sobic001G187800 Sobic005G011000--Sobic003G419800 Sobic005G011000--Sobic002G389200 Sobic005G011000--Sobic005G028300 Sobic007G179600--Sobic001G081300 Sobic007G179600--Sobic001G347100 Sobic007G179600--Sobic003G419800 Sobic007G179600--Sobic001G391101 Sobic007G179600--Sobic005G210700 Sobic009G238700 Sobic009G238700 Sobic007G179600--Sobic009G238700 Sobic008G066900 Sobic008G066900 Sobic007G179600--Sobic008G066900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801
Octagon: transcription factors


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