Gene annotation
Transcriptome id Sobic.008G066900.1
Synonym Sb08g005540
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1B6PBR3
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF398
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46050 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os07g15570.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a040677
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.007G179600 pentatricopeptide, putative, expressed -
3 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
4 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
5 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
6 Sobic.006G085900 pentatricopeptide, putative, expressed -
7 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.001G391101 - -
9 Sobic.010G256000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
11 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
12 Sobic.005G148400 OsFBX404 - F-box domain containing protein, expressed -
13 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
14 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
15 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
16 Sobic.010G123700 expressed protein -
17 Sobic.003G156766 - -
18 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.007G187400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
20 Sobic.005G123900 ATP binding protein, putative, expressed K17592: sacsin


Gene co-expression network
sample Sobic008G066900 Sobic008G066900 Sobic005G210700 Sobic005G210700 Sobic008G066900--Sobic005G210700 Sobic007G179600 Sobic007G179600 Sobic008G066900--Sobic007G179600 Sobic003G239000 Sobic003G239000 Sobic008G066900--Sobic003G239000 Sobic008G099900 Sobic008G099900 Sobic008G066900--Sobic008G099900 Sobic003G051500 Sobic003G051500 Sobic008G066900--Sobic003G051500 Sobic006G085900 Sobic006G085900 Sobic008G066900--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic008G066900--Sobic009G155400 Sobic001G391101 Sobic001G391101 Sobic008G066900--Sobic001G391101 Sobic010G256000 Sobic010G256000 Sobic008G066900--Sobic010G256000 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic005G210700--Sobic009G116400 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic005G210700--Sobic001G347100 Sobic005G210700--Sobic008G066900 Sobic006G069100 Sobic006G069100 Sobic005G210700--Sobic006G069100 Sobic005G011000 Sobic005G011000 Sobic005G210700--Sobic005G011000 Sobic001G081300 Sobic001G081300 Sobic007G179600--Sobic001G081300 Sobic007G179600--Sobic001G347100 Sobic003G419800 Sobic003G419800 Sobic007G179600--Sobic003G419800 Sobic007G179600--Sobic001G391101 Sobic007G179600--Sobic005G210700 Sobic009G238700 Sobic009G238700 Sobic007G179600--Sobic009G238700 Sobic007G179600--Sobic008G066900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic008G163400 Sobic008G163400 Sobic003G239000--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic003G239000--Sobic004G241000 Sobic002G267600 Sobic002G267600 Sobic003G239000--Sobic002G267600 Sobic001G149100 Sobic001G149100 Sobic003G239000--Sobic001G149100 Sobic003G239000--Sobic009G155400 Sobic008G179000 Sobic008G179000 Sobic003G239000--Sobic008G179000 Sobic003G239000--Sobic006G069100 Sobic004G256900 Sobic004G256900 Sobic003G239000--Sobic004G256900 Sobic003G239000--Sobic008G066900 Sobic008G099900--Sobic005G210700 Sobic008G099900--Sobic006G085900 Sobic008G099900--Sobic009G155400 Sobic002G251800 Sobic002G251800 Sobic008G099900--Sobic002G251800 Sobic004G217900 Sobic004G217900 Sobic008G099900--Sobic004G217900 Sobic006G109400 Sobic006G109400 Sobic008G099900--Sobic006G109400 Sobic008G099900--Sobic009G116400 Sobic008G099900--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic008G099900--Sobic006G271900 Sobic003G051500--Sobic001G391101 Sobic001G001200 Sobic001G001200 Sobic003G051500--Sobic001G001200 Sobic005G028300 Sobic005G028300 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic010G099300 Sobic010G099300 Sobic003G051500--Sobic010G099300 Sobic003G051500--Sobic004G217900 Sobic006G085900--Sobic004G241000 Sobic010G068900 Sobic010G068900 Sobic006G085900--Sobic010G068900 Sobic006G085900--Sobic009G155400 Sobic006G085900--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic006G085900--Sobic002G172500 Sobic006G085900--Sobic008G099900 Sobic002G084400 Sobic002G084400 Sobic006G085900--Sobic002G084400 Sobic001G436600 Sobic001G436600 Sobic006G085900--Sobic001G436600 Sobic006G085900--Sobic005G210700 Sobic009G155400--Sobic009G116400 Sobic009G155400--Sobic008G163400 Sobic009G155400--Sobic004G241000 Sobic009G155400--Sobic006G085900 Sobic009G155400--Sobic004G217900 Sobic009G155400--Sobic006G069100 Sobic009G155400--Sobic002G172500 Sobic006G262700 Sobic006G262700 Sobic009G155400--Sobic006G262700 Sobic009G155400--Sobic005G210700 Sobic001G391101--Sobic001G081300 Sobic001G391101--Sobic001G347100 Sobic001G391101--Sobic003G051500 Sobic001G391101--Sobic005G028300 Sobic001G391101--Sobic007G179600 Sobic001G391101--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic001G391101--Sobic003G014700 Sobic001G391101--Sobic001G001200 Sobic001G391101--Sobic004G241000 Sobic004G025100 Sobic004G025100 Sobic010G256000--Sobic004G025100 Sobic010G256000--Sobic006G069100 Sobic002G218700 Sobic002G218700 Sobic010G256000--Sobic002G218700 Sobic001G122200 Sobic001G122200 Sobic010G256000--Sobic001G122200 Sobic010G256000--Sobic008G066900 Sobic010G256000--Sobic009G155400 Sobic002G389200 Sobic002G389200 Sobic010G256000--Sobic002G389200 Sobic005G168300 Sobic005G168300 Sobic010G256000--Sobic005G168300 Sobic002G183300 Sobic002G183300 Sobic010G256000--Sobic002G183300
Octagon: transcription factors


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