Gene annotation
Transcriptome id Sobic.003G051500.2,Sobic.003G051500.1
Synonym Sb03g004480
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PPR repeat domain containing protein, putative, expressed
UniProt C5XNF7
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF306
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G66345 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g07610.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a023259
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G391101 - -
2 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
4 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
5 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
7 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
8 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
9 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
10 Sobic.001G390900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
11 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
12 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
14 Sobic.007G179600 pentatricopeptide, putative, expressed -
15 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
16 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
17 Sobic.001G149100 vegetative storage protein, putative, expressed -
18 Sobic.003G299200 pentatricopeptide, putative, expressed -
19 Sobic.009G238700 EMB2744, putative, expressed -
20 Sobic.008G147400 "responsible for fertility restoration, localized in anthers"(PubMedID : 20585750)@tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic003G051500 Sobic003G051500 Sobic001G391101 Sobic001G391101 Sobic003G051500--Sobic001G391101 Sobic001G001200 Sobic001G001200 Sobic003G051500--Sobic001G001200 Sobic005G028300 Sobic005G028300 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic001G081300 Sobic001G081300 Sobic003G051500--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic010G099300 Sobic010G099300 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic001G391101--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic001G391101--Sobic001G347100 Sobic001G391101--Sobic003G051500 Sobic001G391101--Sobic005G028300 Sobic007G179600 Sobic007G179600 Sobic001G391101--Sobic007G179600 Sobic001G391101--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic001G391101--Sobic003G014700 Sobic001G391101--Sobic001G001200 Sobic004G241000 Sobic004G241000 Sobic001G391101--Sobic004G241000 Sobic001G001200--Sobic003G051500 Sobic001G001200--Sobic005G028300 Sobic001G001200--Sobic003G419800 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G001200--Sobic001G081300 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic002G251800 Sobic002G251800 Sobic005G028300--Sobic002G251800 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900 Sobic007G060600 Sobic007G060600 Sobic001G040600--Sobic007G060600 Sobic006G271900 Sobic006G271900 Sobic001G040600--Sobic006G271900 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G049800 Sobic001G049800 Sobic001G040600--Sobic001G049800 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic001G040600--Sobic002G251800 Sobic001G081300--Sobic001G391101 Sobic001G081300--Sobic007G179600 Sobic001G081300--Sobic001G347100 Sobic009G238700 Sobic009G238700 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic001G081300--Sobic010G099300 Sobic003G419800--Sobic005G028300 Sobic003G419800--Sobic001G001200 Sobic003G419800--Sobic007G179600 Sobic003G419800--Sobic001G081300 Sobic003G419800--Sobic003G051500 Sobic003G419800--Sobic001G391101 Sobic003G419800--Sobic001G390900 Sobic003G419800--Sobic003G014700 Sobic003G419800--Sobic007G182600 Sobic007G182600--Sobic008G100400 Sobic007G182600--Sobic010G099300 Sobic001G061600 Sobic001G061600 Sobic007G182600--Sobic001G061600 Sobic007G182600--Sobic001G081300 Sobic007G182600--Sobic001G040600 Sobic008G147400 Sobic008G147400 Sobic007G182600--Sobic008G147400 Sobic007G182600--Sobic003G051500 Sobic010G252000 Sobic010G252000 Sobic007G182600--Sobic010G252000 Sobic002G380100 Sobic002G380100 Sobic007G182600--Sobic002G380100 Sobic010G099300--Sobic001G040600 Sobic010G099300--Sobic007G182600 Sobic010G099300--Sobic007G060600 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic010G099300--Sobic001G049800 Sobic010G099300--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic010G099300--Sobic001G395300 Sobic010G099300--Sobic006G271900 Sobic009G155400 Sobic009G155400 Sobic004G217900--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic004G217900--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic004G217900--Sobic009G116400 Sobic001G187800 Sobic001G187800 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic004G217900--Sobic003G051500 Sobic004G217900--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic004G217900--Sobic010G190900 Sobic001G149100 Sobic001G149100 Sobic004G217900--Sobic001G149100
Octagon: transcription factors


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