Gene annotation
Transcriptome id Sobic.001G040600.1,Sobic.001G040600.2,Sobic.001G040600.3
Synonym Sb01g003750, GYRA
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DNA topoisomerase 2, putative, expressed
UniProt A0A1Z5S491 , A0A1B6QH79 , A0A1Z5S4L2
Pfam PF03989 PF00521
Panther DB PTHR10169 PTHR10169:SF48
NCBI CDD KOG0355; DNA topoisomerase type II
KEGG Orthology K02469; DNA gyrase subunit A
Gene Ontology GO:0006265; DNA topological change GO:0005694chromosome GO:0005524ATP binding GO:0003916DNA topoisomerase activity GO:0003677DNA binding GO:0003918DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity


Orthologs (automatic annotation)
TAIR AT3G10690 : DNA GYRASE A
RAP-DB (Rice) LOC_Os02g47150.1 : DNA topoisomerase 2, putative, expressed
MaizeGDB (Corn) Zm00025a016468
Brachypodium KQK12516 , KQK12517 , PNT73920
Barley HORVU5Hr1G111480.18 , HORVU5Hr1G111480.19 , HORVU5Hr1G111480.14 , HORVU5Hr1G111480.15 , HORVU5Hr1G111480.16 , HORVU5Hr1G111480.17 , HORVU5Hr1G111480.10 , HORVU5Hr1G111480.11 , HORVU5Hr1G111480.12 , HORVU5Hr1G111480.13 , HORVU5Hr1G111480.6 , HORVU5Hr1G111480.7 , HORVU5Hr1G111480.4 , HORVU5Hr1G111480.5 , HORVU5Hr1G111480.2 , HORVU5Hr1G111480.3 , HORVU5Hr1G111480.1 , HORVU5Hr1G111480.8 , HORVU5Hr1G111480.9
Wheat TraesCS5B02G479200 , TraesCS5A02G467500 , TraesCS5D02G480300 , TraesCS5A02G467500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
2 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
3 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
4 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
5 Sobic.001G049800 DDT domain containing protein, putative, expressed -
6 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
7 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -
8 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
10 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
11 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
12 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
13 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
14 Sobic.001G437801 - K04077: groEL, chaperonin GroEL
15 Sobic.009G238700 EMB2744, putative, expressed -
16 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
17 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
18 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
19 Sobic.001G391101 - -
20 Sobic.006G273900 expressed protein -


Gene co-expression network
sample Sobic001G040600 Sobic001G040600 Sobic007G060600 Sobic007G060600 Sobic001G040600--Sobic007G060600 Sobic006G271900 Sobic006G271900 Sobic001G040600--Sobic006G271900 Sobic010G099300 Sobic010G099300 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G049800 Sobic001G049800 Sobic001G040600--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G081300 Sobic001G081300 Sobic001G040600--Sobic001G081300 Sobic002G251800 Sobic002G251800 Sobic001G040600--Sobic002G251800 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic006G271900--Sobic001G040600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic006G271900--Sobic001G049800 Sobic006G271900--Sobic006G111200 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic005G028300 Sobic005G028300 Sobic006G271900--Sobic005G028300 Sobic006G271900--Sobic001G081300 Sobic010G099300--Sobic001G040600 Sobic007G182600 Sobic007G182600 Sobic010G099300--Sobic007G182600 Sobic010G099300--Sobic007G060600 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic010G099300--Sobic001G049800 Sobic010G099300--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic010G099300--Sobic001G395300 Sobic010G099300--Sobic006G271900 Sobic008G068100 Sobic008G068100 Sobic003G336500--Sobic008G068100 Sobic003G336500--Sobic001G040600 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic001G483800 Sobic001G483800 Sobic003G336500--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic003G336500--Sobic008G100400 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic001G391101 Sobic001G391101 Sobic003G051500--Sobic001G391101 Sobic001G001200 Sobic001G001200 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic003G051500--Sobic003G419800 Sobic003G051500--Sobic007G182600 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic008G100400--Sobic007G182600 Sobic008G100400--Sobic001G040600 Sobic008G100400--Sobic003G336500 Sobic010G157700 Sobic010G157700 Sobic008G100400--Sobic010G157700 Sobic008G147400 Sobic008G147400 Sobic008G100400--Sobic008G147400 Sobic009G096100 Sobic009G096100 Sobic008G100400--Sobic009G096100 Sobic008G100400--Sobic001G081300 Sobic008G100400--Sobic010G099300 Sobic009G148200 Sobic009G148200 Sobic008G100400--Sobic009G148200 Sobic001G081300--Sobic001G391101 Sobic007G179600 Sobic007G179600 Sobic001G081300--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic001G081300--Sobic001G347100 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic001G081300--Sobic010G099300 Sobic002G251800--Sobic005G028300 Sobic007G038700 Sobic007G038700 Sobic002G251800--Sobic007G038700 Sobic002G084400 Sobic002G084400 Sobic002G251800--Sobic002G084400 Sobic002G251800--Sobic006G271900 Sobic002G251800--Sobic001G040600 Sobic008G099900 Sobic008G099900 Sobic002G251800--Sobic008G099900 Sobic006G085900 Sobic006G085900 Sobic002G251800--Sobic006G085900 Sobic002G251800--Sobic007G060600 Sobic002G251800--Sobic001G049800
Octagon: transcription factors


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