Gene annotation
Transcriptome id Sobic.009G238700.4,Sobic.009G238700.5,Sobic.009G238700.6,Sobic.009G238700.1,Sobic.009G238700.7,Sobic.009G238700.2
Synonym EMB2744, Sb09g029090
Functional annotation EMB2744, putative, expressed
UniProt A0A1B6PA61 , A0A1Z5R3Y4
Pfam PF13041 PF01535 PF14432 PF13812 PF13812 PF14432 PF01535 PF13041 PF01535 PF13041
Panther DB PTHR24015:SF382 PTHR24015 PTHR24015 PTHR24015:SF382
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39680 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os05g49740.1 : EMB2744, putative, expressed
MaizeGDB (Corn) Zm00025a044643
Brachypodium KQK04768 , KQK04767 , PNT70677
Barley HORVU2Hr1G025770.3 , HORVU2Hr1G025770.2 , HORVU2Hr1G025770.1 , HORVU2Hr1G025770.7 , HORVU2Hr1G025770.6 , HORVU2Hr1G025770.5 , HORVU2Hr1G025770.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
2 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
4 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
5 Sobic.001G049800 DDT domain containing protein, putative, expressed -
6 Sobic.007G179600 pentatricopeptide, putative, expressed -
7 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
8 Sobic.003G299200 pentatricopeptide, putative, expressed -
9 Sobic.003G352100 pentatricopeptide, putative, expressed -
10 Sobic.001G391101 - -
11 Sobic.001G149100 vegetative storage protein, putative, expressed -
12 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
14 Sobic.006G109400 pentatricopeptide, putative, expressed -
15 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
16 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
17 Sobic.006G069100 pentatricopeptide, putative, expressed -
18 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
19 Sobic.001G212200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LOI1, putative, expressed -
20 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic009G238700 Sobic009G238700 Sobic007G060600 Sobic007G060600 Sobic009G238700--Sobic007G060600 Sobic001G081300 Sobic001G081300 Sobic009G238700--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic009G238700--Sobic001G347100 Sobic001G040600 Sobic001G040600 Sobic009G238700--Sobic001G040600 Sobic001G049800 Sobic001G049800 Sobic009G238700--Sobic001G049800 Sobic007G179600 Sobic007G179600 Sobic009G238700--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic009G238700--Sobic006G271900 Sobic003G299200 Sobic003G299200 Sobic009G238700--Sobic003G299200 Sobic003G352100 Sobic003G352100 Sobic009G238700--Sobic003G352100 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic001G391101 Sobic001G391101 Sobic001G081300--Sobic001G391101 Sobic001G081300--Sobic007G179600 Sobic001G081300--Sobic001G347100 Sobic001G081300--Sobic009G238700 Sobic003G051500 Sobic003G051500 Sobic001G081300--Sobic003G051500 Sobic003G419800 Sobic003G419800 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic010G099300 Sobic010G099300 Sobic001G081300--Sobic010G099300 Sobic001G149100 Sobic001G149100 Sobic001G347100--Sobic001G149100 Sobic001G347100--Sobic001G391101 Sobic001G347100--Sobic001G081300 Sobic001G347100--Sobic009G238700 Sobic001G347100--Sobic007G179600 Sobic001G347100--Sobic003G299200 Sobic004G241000 Sobic004G241000 Sobic001G347100--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic001G347100--Sobic006G069100 Sobic009G155400 Sobic009G155400 Sobic001G347100--Sobic009G155400 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic002G251800 Sobic002G251800 Sobic001G040600--Sobic002G251800 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic007G179600--Sobic001G081300 Sobic007G179600--Sobic001G347100 Sobic007G179600--Sobic003G419800 Sobic007G179600--Sobic001G391101 Sobic005G210700 Sobic005G210700 Sobic007G179600--Sobic005G210700 Sobic007G179600--Sobic009G238700 Sobic008G066900 Sobic008G066900 Sobic007G179600--Sobic008G066900 Sobic008G099900 Sobic008G099900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic006G271900--Sobic001G040600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic006G271900--Sobic001G049800 Sobic006G271900--Sobic006G111200 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic005G028300 Sobic005G028300 Sobic006G271900--Sobic005G028300 Sobic006G271900--Sobic001G081300 Sobic003G299200--Sobic001G149100 Sobic003G299200--Sobic001G347100 Sobic003G299200--Sobic001G081300 Sobic001G401400 Sobic001G401400 Sobic003G299200--Sobic001G401400 Sobic003G299200--Sobic009G238700 Sobic008G163400 Sobic008G163400 Sobic003G299200--Sobic008G163400 Sobic002G267600 Sobic002G267600 Sobic003G299200--Sobic002G267600 Sobic003G299200--Sobic003G051500 Sobic003G299200--Sobic001G040600 Sobic003G352100--Sobic009G238700 Sobic002G110500 Sobic002G110500 Sobic003G352100--Sobic002G110500 Sobic008G113300 Sobic008G113300 Sobic003G352100--Sobic008G113300 Sobic003G352100--Sobic007G060600 Sobic009G105400 Sobic009G105400 Sobic003G352100--Sobic009G105400 Sobic009G063500 Sobic009G063500 Sobic003G352100--Sobic009G063500 Sobic007G006800 Sobic007G006800 Sobic003G352100--Sobic007G006800 Sobic003G153900 Sobic003G153900 Sobic003G352100--Sobic003G153900 Sobic003G352100--Sobic001G049800
Octagon: transcription factors


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