Gene annotation
Transcriptome id Sobic.001G149100.1
Synonym Sb01g012973
Functional annotation vegetative storage protein, putative, expressed
UniProt Q8W0Q5
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF665
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11290 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g74600.1 : vegetative storage protein, putative, expressed
MaizeGDB (Corn) Zm00025a032684
Brachypodium KQK11841
Barley HORVU7Hr1G114440.1 , HORVU2Hr1G012210.8 , HORVU2Hr1G012210.9 , HORVU2Hr1G012210.6 , HORVU2Hr1G012210.7 , HORVU2Hr1G012210.4 , HORVU2Hr1G012210.5 , HORVU2Hr1G012210.2 , HORVU2Hr1G012210.3 , HORVU2Hr1G012210.1 , HORVU5Hr1G011340.1 , HORVU7Hr1G114390.1 , HORVU6Hr1G057130.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
2 Sobic.003G299200 pentatricopeptide, putative, expressed -
3 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
4 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
7 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
8 Sobic.006G069100 pentatricopeptide, putative, expressed -
9 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
11 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
13 Sobic.001G391101 - -
14 Sobic.002G240900 pentatricopeptide, putative, expressed -
15 Sobic.007G187400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
16 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
18 Sobic.008G009000 pentatricopeptide, putative, expressed -
19 Sobic.002G110400 pentatricopeptide domain containing protein, putative, expressed -
20 Sobic.009G238700 EMB2744, putative, expressed -


Gene co-expression network
sample Sobic001G149100 Sobic001G149100 Sobic001G347100 Sobic001G347100 Sobic001G149100--Sobic001G347100 Sobic003G299200 Sobic003G299200 Sobic001G149100--Sobic003G299200 Sobic010G252700 Sobic010G252700 Sobic001G149100--Sobic010G252700 Sobic008G179000 Sobic008G179000 Sobic001G149100--Sobic008G179000 Sobic004G241000 Sobic004G241000 Sobic001G149100--Sobic004G241000 Sobic008G163400 Sobic008G163400 Sobic001G149100--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic001G149100--Sobic003G239000 Sobic006G069100 Sobic006G069100 Sobic001G149100--Sobic006G069100 Sobic002G267600 Sobic002G267600 Sobic001G149100--Sobic002G267600 Sobic001G347100--Sobic001G149100 Sobic001G391101 Sobic001G391101 Sobic001G347100--Sobic001G391101 Sobic001G081300 Sobic001G081300 Sobic001G347100--Sobic001G081300 Sobic009G238700 Sobic009G238700 Sobic001G347100--Sobic009G238700 Sobic007G179600 Sobic007G179600 Sobic001G347100--Sobic007G179600 Sobic001G347100--Sobic003G299200 Sobic001G347100--Sobic004G241000 Sobic001G347100--Sobic006G069100 Sobic009G155400 Sobic009G155400 Sobic001G347100--Sobic009G155400 Sobic003G299200--Sobic001G149100 Sobic003G299200--Sobic001G347100 Sobic003G299200--Sobic001G081300 Sobic001G401400 Sobic001G401400 Sobic003G299200--Sobic001G401400 Sobic003G299200--Sobic009G238700 Sobic003G299200--Sobic008G163400 Sobic003G299200--Sobic002G267600 Sobic003G051500 Sobic003G051500 Sobic003G299200--Sobic003G051500 Sobic001G040600 Sobic001G040600 Sobic003G299200--Sobic001G040600 Sobic010G252700--Sobic008G179000 Sobic007G123100 Sobic007G123100 Sobic010G252700--Sobic007G123100 Sobic009G052100 Sobic009G052100 Sobic010G252700--Sobic009G052100 Sobic002G362200 Sobic002G362200 Sobic010G252700--Sobic002G362200 Sobic010G252700--Sobic001G149100 Sobic008G031200 Sobic008G031200 Sobic010G252700--Sobic008G031200 Sobic008G090000 Sobic008G090000 Sobic010G252700--Sobic008G090000 Sobic006G071628 Sobic006G071628 Sobic010G252700--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic010G252700--Sobic010G250800 Sobic008G179000--Sobic010G252700 Sobic008G179000--Sobic008G031200 Sobic001G268300 Sobic001G268300 Sobic008G179000--Sobic001G268300 Sobic008G179000--Sobic002G362200 Sobic008G179000--Sobic007G123100 Sobic008G179000--Sobic001G149100 Sobic008G179000--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic008G179000--Sobic004G256900 Sobic008G009000 Sobic008G009000 Sobic008G179000--Sobic008G009000 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic010G190900 Sobic010G190900 Sobic004G241000--Sobic010G190900 Sobic010G068900 Sobic010G068900 Sobic004G241000--Sobic010G068900 Sobic004G241000--Sobic003G239000 Sobic006G085900 Sobic006G085900 Sobic004G241000--Sobic006G085900 Sobic002G172500 Sobic002G172500 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400 Sobic008G163400--Sobic003G239000 Sobic008G163400--Sobic004G241000 Sobic008G163400--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic008G163400--Sobic009G116400 Sobic008G163400--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic008G163400--Sobic006G262800 Sobic001G122200 Sobic001G122200 Sobic008G163400--Sobic001G122200 Sobic008G163400--Sobic002G267600 Sobic008G163400--Sobic001G149100 Sobic003G239000--Sobic008G163400 Sobic003G239000--Sobic004G241000 Sobic003G239000--Sobic002G267600 Sobic003G239000--Sobic001G149100 Sobic003G239000--Sobic009G155400 Sobic003G239000--Sobic008G179000 Sobic003G239000--Sobic006G069100 Sobic003G239000--Sobic004G256900 Sobic008G066900 Sobic008G066900 Sobic003G239000--Sobic008G066900 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic002G267600--Sobic008G163400 Sobic002G267600--Sobic003G239000 Sobic002G267600--Sobic001G149100 Sobic007G031300 Sobic007G031300 Sobic002G267600--Sobic007G031300 Sobic002G267600--Sobic003G299200 Sobic002G267600--Sobic008G179000 Sobic004G208100 Sobic004G208100 Sobic002G267600--Sobic004G208100 Sobic001G408300 Sobic001G408300 Sobic002G267600--Sobic001G408300 Sobic004G047500 Sobic004G047500 Sobic002G267600--Sobic004G047500
Octagon: transcription factors


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