Gene annotation
Transcriptome id Sobic.002G267600.1
Synonym Sb02g030160
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1W0W5V6
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF48
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36980 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os09g34870.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a014369
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
3 Sobic.001G149100 vegetative storage protein, putative, expressed -
4 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
5 Sobic.003G299200 pentatricopeptide, putative, expressed -
6 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.004G208100 expressed protein -
8 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
10 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
11 Sobic.008G009000 pentatricopeptide, putative, expressed -
12 Sobic.002G135100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K02326: DNA polymerase epsilon subunit 3
13 Sobic.008G031200 pentatricopeptide, putative, expressed -
14 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
15 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.001G116800 zinc finger family protein, putative, expressed -
17 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
19 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
20 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G267600 Sobic002G267600 Sobic008G163400 Sobic008G163400 Sobic002G267600--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic002G267600--Sobic003G239000 Sobic001G149100 Sobic001G149100 Sobic002G267600--Sobic001G149100 Sobic007G031300 Sobic007G031300 Sobic002G267600--Sobic007G031300 Sobic003G299200 Sobic003G299200 Sobic002G267600--Sobic003G299200 Sobic008G179000 Sobic008G179000 Sobic002G267600--Sobic008G179000 Sobic004G208100 Sobic004G208100 Sobic002G267600--Sobic004G208100 Sobic001G408300 Sobic001G408300 Sobic002G267600--Sobic001G408300 Sobic004G047500 Sobic004G047500 Sobic002G267600--Sobic004G047500 Sobic008G163400--Sobic003G239000 Sobic004G241000 Sobic004G241000 Sobic008G163400--Sobic004G241000 Sobic009G155400 Sobic009G155400 Sobic008G163400--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic008G163400--Sobic009G116400 Sobic004G256900 Sobic004G256900 Sobic008G163400--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic008G163400--Sobic006G262800 Sobic001G122200 Sobic001G122200 Sobic008G163400--Sobic001G122200 Sobic008G163400--Sobic002G267600 Sobic008G163400--Sobic001G149100 Sobic003G239000--Sobic008G163400 Sobic003G239000--Sobic004G241000 Sobic003G239000--Sobic002G267600 Sobic003G239000--Sobic001G149100 Sobic003G239000--Sobic009G155400 Sobic003G239000--Sobic008G179000 Sobic006G069100 Sobic006G069100 Sobic003G239000--Sobic006G069100 Sobic003G239000--Sobic004G256900 Sobic008G066900 Sobic008G066900 Sobic003G239000--Sobic008G066900 Sobic001G347100 Sobic001G347100 Sobic001G149100--Sobic001G347100 Sobic001G149100--Sobic003G299200 Sobic010G252700 Sobic010G252700 Sobic001G149100--Sobic010G252700 Sobic001G149100--Sobic008G179000 Sobic001G149100--Sobic004G241000 Sobic001G149100--Sobic008G163400 Sobic001G149100--Sobic003G239000 Sobic001G149100--Sobic006G069100 Sobic001G149100--Sobic002G267600 Sobic008G169400 Sobic008G169400 Sobic007G031300--Sobic008G169400 Sobic001G211500 Sobic001G211500 Sobic007G031300--Sobic001G211500 Sobic004G129500 Sobic004G129500 Sobic007G031300--Sobic004G129500 Sobic001G296800 Sobic001G296800 Sobic007G031300--Sobic001G296800 Sobic002G430900 Sobic002G430900 Sobic007G031300--Sobic002G430900 Sobic003G028400 Sobic003G028400 Sobic007G031300--Sobic003G028400 Sobic001G210000 Sobic001G210000 Sobic007G031300--Sobic001G210000 Sobic003G153900 Sobic003G153900 Sobic007G031300--Sobic003G153900 Sobic003G212600 Sobic003G212600 Sobic007G031300--Sobic003G212600 Sobic003G299200--Sobic001G149100 Sobic003G299200--Sobic001G347100 Sobic001G081300 Sobic001G081300 Sobic003G299200--Sobic001G081300 Sobic001G401400 Sobic001G401400 Sobic003G299200--Sobic001G401400 Sobic009G238700 Sobic009G238700 Sobic003G299200--Sobic009G238700 Sobic003G299200--Sobic008G163400 Sobic003G299200--Sobic002G267600 Sobic003G051500 Sobic003G051500 Sobic003G299200--Sobic003G051500 Sobic001G040600 Sobic001G040600 Sobic003G299200--Sobic001G040600 Sobic008G179000--Sobic010G252700 Sobic008G031200 Sobic008G031200 Sobic008G179000--Sobic008G031200 Sobic001G268300 Sobic001G268300 Sobic008G179000--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic008G179000--Sobic002G362200 Sobic007G123100 Sobic007G123100 Sobic008G179000--Sobic007G123100 Sobic008G179000--Sobic001G149100 Sobic008G179000--Sobic004G241000 Sobic008G179000--Sobic004G256900 Sobic008G009000 Sobic008G009000 Sobic008G179000--Sobic008G009000 Sobic010G021900 Sobic010G021900 Sobic004G208100--Sobic010G021900 Sobic003G444300 Sobic003G444300 Sobic004G208100--Sobic003G444300 Sobic002G303800 Sobic002G303800 Sobic004G208100--Sobic002G303800 Sobic001G238900 Sobic001G238900 Sobic004G208100--Sobic001G238900 Sobic002G133000 Sobic002G133000 Sobic004G208100--Sobic002G133000 Sobic001G169800 Sobic001G169800 Sobic004G208100--Sobic001G169800 Sobic001G122100 Sobic001G122100 Sobic004G208100--Sobic001G122100 Sobic001G235700 Sobic001G235700 Sobic004G208100--Sobic001G235700 Sobic002G246900 Sobic002G246900 Sobic004G208100--Sobic002G246900 Sobic007G006800 Sobic007G006800 Sobic001G408300--Sobic007G006800 Sobic010G250800 Sobic010G250800 Sobic001G408300--Sobic010G250800 Sobic010G065800 Sobic010G065800 Sobic001G408300--Sobic010G065800 Sobic010G038800 Sobic010G038800 Sobic001G408300--Sobic010G038800 Sobic001G061800 Sobic001G061800 Sobic001G408300--Sobic001G061800 Sobic006G208400 Sobic006G208400 Sobic001G408300--Sobic006G208400 Sobic005G088900 Sobic005G088900 Sobic001G408300--Sobic005G088900 Sobic009G010300 Sobic009G010300 Sobic001G408300--Sobic009G010300 Sobic001G408300--Sobic010G252700 Sobic001G107300 Sobic001G107300 Sobic004G047500--Sobic001G107300 Sobic001G371100 Sobic001G371100 Sobic004G047500--Sobic001G371100 Sobic004G047500--Sobic002G133000 Sobic004G047500--Sobic002G303800 Sobic002G135100 Sobic002G135100 Sobic004G047500--Sobic002G135100 Sobic004G047500--Sobic004G208100 Sobic004G336600 Sobic004G336600 Sobic004G047500--Sobic004G336600 Sobic004G047500--Sobic002G267600 Sobic004G047500--Sobic001G061800
Octagon: transcription factors


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