Gene annotation
Transcriptome id Sobic.001G116800.1
Synonym Sb01g010310
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1B6QIJ2
Pfam PF00641
Panther DB PTHR23111 PTHR23111:SF23
NCBI CDD KOG4198; RNA-binding Ran Zn-finger protein and related proteins
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G70650 : Ran BP2/NZF zinc finger-like superfamily protein
RAP-DB (Rice) LOC_Os03g50430.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a007847 , Zm00025a016983
Brachypodium KQK13621
Barley HORVU4Hr1G007570.2 , HORVU4Hr1G007570.1
Wheat TraesCS4B02G046800 , TraesCS4A02G267600 , TraesCS4D02G046600 , TraesCS4D02G046600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.004G208100 expressed protein -
3 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
4 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase
5 Sobic.008G113700 auxin-binding protein 4 precursor, putative, expressed -
6 Sobic.001G105600 OsFBDUF60 - F-box and DUF domain containing protein, expressed -
7 Sobic.003G098200 expressed protein -
8 Sobic.006G109400 pentatricopeptide, putative, expressed -
9 Sobic.009G193850 - -
10 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
11 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
12 Sobic.001G404700 protein kinase, putative, expressed -
13 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
14 Sobic.004G017100 AGAP001222-PA, putative, expressed -
15 Sobic.006G189200 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
16 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
17 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
18 Sobic.001G131500 - -
19 Sobic.001G149100 vegetative storage protein, putative, expressed -
20 Sobic.002G282200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic001G116800 Sobic001G116800 Sobic002G267600 Sobic002G267600 Sobic001G116800--Sobic002G267600 Sobic004G208100 Sobic004G208100 Sobic001G116800--Sobic004G208100 Sobic001G235700 Sobic001G235700 Sobic001G116800--Sobic001G235700 Sobic001G081900 Sobic001G081900 Sobic001G116800--Sobic001G081900 Sobic008G113700 Sobic008G113700 Sobic001G116800--Sobic008G113700 Sobic001G105600 Sobic001G105600 Sobic001G116800--Sobic001G105600 Sobic003G098200 Sobic003G098200 Sobic001G116800--Sobic003G098200 Sobic006G109400 Sobic006G109400 Sobic001G116800--Sobic006G109400 Sobic009G193850 Sobic009G193850 Sobic001G116800--Sobic009G193850 Sobic008G163400 Sobic008G163400 Sobic002G267600--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic002G267600--Sobic003G239000 Sobic001G149100 Sobic001G149100 Sobic002G267600--Sobic001G149100 Sobic007G031300 Sobic007G031300 Sobic002G267600--Sobic007G031300 Sobic003G299200 Sobic003G299200 Sobic002G267600--Sobic003G299200 Sobic008G179000 Sobic008G179000 Sobic002G267600--Sobic008G179000 Sobic002G267600--Sobic004G208100 Sobic001G408300 Sobic001G408300 Sobic002G267600--Sobic001G408300 Sobic004G047500 Sobic004G047500 Sobic002G267600--Sobic004G047500 Sobic010G021900 Sobic010G021900 Sobic004G208100--Sobic010G021900 Sobic003G444300 Sobic003G444300 Sobic004G208100--Sobic003G444300 Sobic002G303800 Sobic002G303800 Sobic004G208100--Sobic002G303800 Sobic001G238900 Sobic001G238900 Sobic004G208100--Sobic001G238900 Sobic002G133000 Sobic002G133000 Sobic004G208100--Sobic002G133000 Sobic001G169800 Sobic001G169800 Sobic004G208100--Sobic001G169800 Sobic001G122100 Sobic001G122100 Sobic004G208100--Sobic001G122100 Sobic004G208100--Sobic001G235700 Sobic002G246900 Sobic002G246900 Sobic004G208100--Sobic002G246900 Sobic001G097400 Sobic001G097400 Sobic001G235700--Sobic001G097400 Sobic001G436300 Sobic001G436300 Sobic001G235700--Sobic001G436300 Sobic001G235700--Sobic004G208100 Sobic004G190600 Sobic004G190600 Sobic001G235700--Sobic004G190600 Sobic001G440900 Sobic001G440900 Sobic001G235700--Sobic001G440900 Sobic001G235700--Sobic002G303800 Sobic001G235700--Sobic002G133000 Sobic004G343600 Sobic004G343600 Sobic001G235700--Sobic004G343600 Sobic006G127500 Sobic006G127500 Sobic001G235700--Sobic006G127500 Sobic001G371100 Sobic001G371100 Sobic001G081900--Sobic001G371100 Sobic001G397000 Sobic001G397000 Sobic001G081900--Sobic001G397000 Sobic010G125100 Sobic010G125100 Sobic001G081900--Sobic010G125100 Sobic007G079600 Sobic007G079600 Sobic001G081900--Sobic007G079600 Sobic010G144900 Sobic010G144900 Sobic001G081900--Sobic010G144900 Sobic002G101000 Sobic002G101000 Sobic001G081900--Sobic002G101000 Sobic002G304400 Sobic002G304400 Sobic001G081900--Sobic002G304400 Sobic007G171200 Sobic007G171200 Sobic001G081900--Sobic007G171200 Sobic010G032700 Sobic010G032700 Sobic001G081900--Sobic010G032700 Sobic003G310600 Sobic003G310600 Sobic008G113700--Sobic003G310600 Sobic007G092200 Sobic007G092200 Sobic008G113700--Sobic007G092200 Sobic002G282200 Sobic002G282200 Sobic008G113700--Sobic002G282200 Sobic008G113700--Sobic004G047500 Sobic009G071700 Sobic009G071700 Sobic008G113700--Sobic009G071700 Sobic007G137350 Sobic007G137350 Sobic008G113700--Sobic007G137350 Sobic008G113700--Sobic001G081900 Sobic008G113700--Sobic001G436300 Sobic002G353500 Sobic002G353500 Sobic008G113700--Sobic002G353500 Sobic008G099900 Sobic008G099900 Sobic001G105600--Sobic008G099900 Sobic002G183300 Sobic002G183300 Sobic001G105600--Sobic002G183300 Sobic006G271900 Sobic006G271900 Sobic001G105600--Sobic006G271900 Sobic010G092801 Sobic010G092801 Sobic001G105600--Sobic010G092801 Sobic004G227100 Sobic004G227100 Sobic001G105600--Sobic004G227100 Sobic001G105600--Sobic006G109400 Sobic004G025100 Sobic004G025100 Sobic001G105600--Sobic004G025100 Sobic005G210700 Sobic005G210700 Sobic001G105600--Sobic005G210700 Sobic006G193500 Sobic006G193500 Sobic001G105600--Sobic006G193500 Sobic003G098200--Sobic006G127500 Sobic003G098200--Sobic001G097400 Sobic003G257200 Sobic003G257200 Sobic003G098200--Sobic003G257200 Sobic003G436600 Sobic003G436600 Sobic003G098200--Sobic003G436600 Sobic003G098200--Sobic001G436300 Sobic009G233700 Sobic009G233700 Sobic003G098200--Sobic009G233700 Sobic003G098200--Sobic001G235700 Sobic003G425100 Sobic003G425100 Sobic003G098200--Sobic003G425100 Sobic003G098200--Sobic004G227100 Sobic007G030000 Sobic007G030000 Sobic006G109400--Sobic007G030000 Sobic001G347100 Sobic001G347100 Sobic006G109400--Sobic001G347100 Sobic006G109400--Sobic008G099900 Sobic006G069100 Sobic006G069100 Sobic006G109400--Sobic006G069100 Sobic006G109400--Sobic001G408300 Sobic010G038800 Sobic010G038800 Sobic006G109400--Sobic010G038800 Sobic010G277200 Sobic010G277200 Sobic006G109400--Sobic010G277200 Sobic009G155400 Sobic009G155400 Sobic006G109400--Sobic009G155400 Sobic006G109400--Sobic005G210700 Sobic001G041200 Sobic001G041200 Sobic009G193850--Sobic001G041200 Sobic004G011000 Sobic004G011000 Sobic009G193850--Sobic004G011000 Sobic006G216000 Sobic006G216000 Sobic009G193850--Sobic006G216000 Sobic007G162800 Sobic007G162800 Sobic009G193850--Sobic007G162800 Sobic002G148300 Sobic002G148300 Sobic009G193850--Sobic002G148300 Sobic001G404200 Sobic001G404200 Sobic009G193850--Sobic001G404200 Sobic003G118400 Sobic003G118400 Sobic009G193850--Sobic003G118400 Sobic008G080000 Sobic008G080000 Sobic009G193850--Sobic008G080000 Sobic006G242300 Sobic006G242300 Sobic009G193850--Sobic006G242300
Octagon: transcription factors


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