Gene annotation
Transcriptome id Sobic.006G189200.1
Synonym Sb06g026270, SCE1A, ATSCE1, EMB1637, SCE1, AHUS5
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5YEH5
Pfam PF00179
Panther DB PTHR24067:SF110 PTHR24067
NCBI CDD KOG0424; Ubiquitin-protein ligase
KEGG Orthology K10577; UBE2I, ubiquitin-conjugating enzyme E2 I
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57870 : sumo conjugation enzyme 1
RAP-DB (Rice) LOC_Os04g49130.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a010084 , Zm00025a010085
Brachypodium KQK23919
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G189200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G404700 protein kinase, putative, expressed -
2 Sobic.006G134900 ribonucleoside-diphosphate reductase small chain, putative, expressed K10808: ribonucleoside-diphosphate reductase subunit M2
3 Sobic.004G208100 expressed protein -
4 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
5 Sobic.004G229200 phosphate-induced protein 1 conserved region domain containing protein, expressed -
6 Sobic.006G081800 histone H3, putative, expressed K11253: histone H3
7 Sobic.001G108400 LRR receptor-like protein kinase, putative, expressed -
8 Sobic.002G151400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like
9 Sobic.001G026600 - -
10 Sobic.006G207400 expressed protein -
11 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
12 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
13 Sobic.002G289800 HMG1/2, putative, expressed -
14 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
15 Sobic.001G116600 inactive receptor kinase At2g26730 precursor, putative, expressed -
16 Sobic.010G186500 targeting protein for Xklp2, putative, expressed -
17 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
18 Sobic.002G246900 expressed protein -
19 Sobic.001G261549 - -
20 Sobic.007G154500 F-box protein, putative, expressed -


Gene co-expression network
sample Sobic006G189200 Sobic006G189200 Sobic001G404700 Sobic001G404700 Sobic006G189200--Sobic001G404700 Sobic006G134900 Sobic006G134900 Sobic006G189200--Sobic006G134900 Sobic004G208100 Sobic004G208100 Sobic006G189200--Sobic004G208100 Sobic001G169800 Sobic001G169800 Sobic006G189200--Sobic001G169800 Sobic004G229200 Sobic004G229200 Sobic006G189200--Sobic004G229200 Sobic006G081800 Sobic006G081800 Sobic006G189200--Sobic006G081800 Sobic001G108400 Sobic001G108400 Sobic006G189200--Sobic001G108400 Sobic002G151400 Sobic002G151400 Sobic006G189200--Sobic002G151400 Sobic001G026600 Sobic001G026600 Sobic006G189200--Sobic001G026600 Sobic001G404700--Sobic006G189200 Sobic001G404700--Sobic001G108400 Sobic003G412800 Sobic003G412800 Sobic001G404700--Sobic003G412800 Sobic010G079100 Sobic010G079100 Sobic001G404700--Sobic010G079100 Sobic001G404700--Sobic004G208100 Sobic004G309800 Sobic004G309800 Sobic001G404700--Sobic004G309800 Sobic003G230000 Sobic003G230000 Sobic001G404700--Sobic003G230000 Sobic001G404700--Sobic002G151400 Sobic002G230800 Sobic002G230800 Sobic001G404700--Sobic002G230800 Sobic006G134900--Sobic006G081800 Sobic006G134900--Sobic001G169800 Sobic007G176800 Sobic007G176800 Sobic006G134900--Sobic007G176800 Sobic004G170500 Sobic004G170500 Sobic006G134900--Sobic004G170500 Sobic006G134900--Sobic006G189200 Sobic006G116500 Sobic006G116500 Sobic006G134900--Sobic006G116500 Sobic001G142000 Sobic001G142000 Sobic006G134900--Sobic001G142000 Sobic001G078600 Sobic001G078600 Sobic006G134900--Sobic001G078600 Sobic001G105800 Sobic001G105800 Sobic006G134900--Sobic001G105800 Sobic010G021900 Sobic010G021900 Sobic004G208100--Sobic010G021900 Sobic003G444300 Sobic003G444300 Sobic004G208100--Sobic003G444300 Sobic002G303800 Sobic002G303800 Sobic004G208100--Sobic002G303800 Sobic001G238900 Sobic001G238900 Sobic004G208100--Sobic001G238900 Sobic002G133000 Sobic002G133000 Sobic004G208100--Sobic002G133000 Sobic004G208100--Sobic001G169800 Sobic001G122100 Sobic001G122100 Sobic004G208100--Sobic001G122100 Sobic001G235700 Sobic001G235700 Sobic004G208100--Sobic001G235700 Sobic002G246900 Sobic002G246900 Sobic004G208100--Sobic002G246900 Sobic001G456500 Sobic001G456500 Sobic001G169800--Sobic001G456500 Sobic001G169800--Sobic006G116500 Sobic001G169800--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic001G169800--Sobic001G083300 Sobic002G223900 Sobic002G223900 Sobic001G169800--Sobic002G223900 Sobic003G183700 Sobic003G183700 Sobic001G169800--Sobic003G183700 Sobic001G169800--Sobic001G105800 Sobic004G355500 Sobic004G355500 Sobic001G169800--Sobic004G355500 Sobic003G179500 Sobic003G179500 Sobic001G169800--Sobic003G179500 Sobic004G229200--Sobic006G081800 Sobic010G246400 Sobic010G246400 Sobic004G229200--Sobic010G246400 Sobic010G269700 Sobic010G269700 Sobic004G229200--Sobic010G269700 Sobic002G289800 Sobic002G289800 Sobic004G229200--Sobic002G289800 Sobic003G316601 Sobic003G316601 Sobic004G229200--Sobic003G316601 Sobic001G116600 Sobic001G116600 Sobic004G229200--Sobic001G116600 Sobic010G230000 Sobic010G230000 Sobic004G229200--Sobic010G230000 Sobic002G128000 Sobic002G128000 Sobic004G229200--Sobic002G128000 Sobic004G075900 Sobic004G075900 Sobic004G229200--Sobic004G075900 Sobic006G081800--Sobic006G134900 Sobic006G081800--Sobic004G229200 Sobic006G081800--Sobic001G169800 Sobic006G081800--Sobic001G105800 Sobic007G017700 Sobic007G017700 Sobic006G081800--Sobic007G017700 Sobic006G081800--Sobic002G289800 Sobic006G081800--Sobic001G238900 Sobic006G081800--Sobic002G246900 Sobic004G279601 Sobic004G279601 Sobic006G081800--Sobic004G279601 Sobic007G044400 Sobic007G044400 Sobic001G108400--Sobic007G044400 Sobic003G410600 Sobic003G410600 Sobic001G108400--Sobic003G410600 Sobic002G313600 Sobic002G313600 Sobic001G108400--Sobic002G313600 Sobic009G001200 Sobic009G001200 Sobic001G108400--Sobic009G001200 Sobic001G108400--Sobic001G404700 Sobic006G207400 Sobic006G207400 Sobic001G108400--Sobic006G207400 Sobic003G017500 Sobic003G017500 Sobic001G108400--Sobic003G017500 Sobic001G108400--Sobic001G169800 Sobic001G108400--Sobic001G026600 Sobic002G151400--Sobic004G229200 Sobic007G196800 Sobic007G196800 Sobic002G151400--Sobic007G196800 Sobic002G151400--Sobic001G116600 Sobic002G151400--Sobic006G189200 Sobic002G151400--Sobic001G404700 Sobic002G151400--Sobic001G108400 Sobic002G151400--Sobic004G075900 Sobic003G134500 Sobic003G134500 Sobic002G151400--Sobic003G134500 Sobic002G151400--Sobic002G289800 Sobic001G530800 Sobic001G530800 Sobic001G026600--Sobic001G530800 Sobic001G026600--Sobic007G044400 Sobic010G277000 Sobic010G277000 Sobic001G026600--Sobic010G277000 Sobic001G196100 Sobic001G196100 Sobic001G026600--Sobic001G196100 Sobic001G116000 Sobic001G116000 Sobic001G026600--Sobic001G116000 Sobic008G084100 Sobic008G084100 Sobic001G026600--Sobic008G084100 Sobic003G319000 Sobic003G319000 Sobic001G026600--Sobic003G319000 Sobic001G026600--Sobic002G313600 Sobic001G436100 Sobic001G436100 Sobic001G026600--Sobic001G436100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.