Gene annotation
Transcriptome id Sobic.002G151400.1
Synonym Sb02g018550
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
cyclin-dependent kinase G-1, putative, expressed
UniProt A0A1W0W420
Pfam PF07714
Panther DB PTHR24056 PTHR24056:SF183
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily KOG0594Protein kinase PCTAIRE and related kinases KOG0659Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 KOG0663Protein kinase PITSLRE and related kinases
KEGG Orthology K08818; cell division cycle 2-like
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G67580 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os10g03480.1 : cyclin-dependent kinase G-1, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G229200 phosphate-induced protein 1 conserved region domain containing protein, expressed -
2 Sobic.007G196800 UDP-glucuronate 4-epimerase, putative, expressed K08679: UDP-glucuronate 4-epimerase
3 Sobic.001G116600 inactive receptor kinase At2g26730 precursor, putative, expressed -
4 Sobic.006G189200 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
5 Sobic.001G404700 protein kinase, putative, expressed -
6 Sobic.001G108400 LRR receptor-like protein kinase, putative, expressed -
7 Sobic.004G075900 CSLA1 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
8 Sobic.003G134500 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
9 Sobic.002G289800 HMG1/2, putative, expressed -
10 Sobic.006G134900 ribonucleoside-diphosphate reductase small chain, putative, expressed K10808: ribonucleoside-diphosphate reductase subunit M2
11 Sobic.010G246400 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
12 Sobic.006G081800 histone H3, putative, expressed K11253: histone H3
13 Sobic.003G406600 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GW8/OsPL16(Ortholog in rice:Wang et al., 2012)"(PubMedID : 31659873)@OsSPL2 - SBP-box gene family member, expressed -
14 Sobic.003G442300 NAD dependent epimerase/dehydratase family protein, putative, expressed K12449: UDP-apiose/xylose synthase
15 Sobic.009G194200 CSLC7 - cellulose synthase-like family C, expressed -
16 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
17 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
18 Sobic.001G289900 AT hook motif domain containing protein, expressed -
19 Sobic.010G269700 expressed protein -
20 Sobic.010G230000 monocopper oxidase, putative, expressed -


Gene co-expression network
sample Sobic002G151400 Sobic002G151400 Sobic004G229200 Sobic004G229200 Sobic002G151400--Sobic004G229200 Sobic007G196800 Sobic007G196800 Sobic002G151400--Sobic007G196800 Sobic001G116600 Sobic001G116600 Sobic002G151400--Sobic001G116600 Sobic006G189200 Sobic006G189200 Sobic002G151400--Sobic006G189200 Sobic001G404700 Sobic001G404700 Sobic002G151400--Sobic001G404700 Sobic001G108400 Sobic001G108400 Sobic002G151400--Sobic001G108400 Sobic004G075900 Sobic004G075900 Sobic002G151400--Sobic004G075900 Sobic003G134500 Sobic003G134500 Sobic002G151400--Sobic003G134500 Sobic002G289800 Sobic002G289800 Sobic002G151400--Sobic002G289800 Sobic006G081800 Sobic006G081800 Sobic004G229200--Sobic006G081800 Sobic010G246400 Sobic010G246400 Sobic004G229200--Sobic010G246400 Sobic010G269700 Sobic010G269700 Sobic004G229200--Sobic010G269700 Sobic004G229200--Sobic002G289800 Sobic003G316601 Sobic003G316601 Sobic004G229200--Sobic003G316601 Sobic004G229200--Sobic001G116600 Sobic010G230000 Sobic010G230000 Sobic004G229200--Sobic010G230000 Sobic002G128000 Sobic002G128000 Sobic004G229200--Sobic002G128000 Sobic004G229200--Sobic004G075900 Sobic007G196800--Sobic003G134500 Sobic007G196800--Sobic004G229200 Sobic001G091500 Sobic001G091500 Sobic007G196800--Sobic001G091500 Sobic001G069700 Sobic001G069700 Sobic007G196800--Sobic001G069700 Sobic003G084100 Sobic003G084100 Sobic007G196800--Sobic003G084100 Sobic003G442300 Sobic003G442300 Sobic007G196800--Sobic003G442300 Sobic010G092400 Sobic010G092400 Sobic007G196800--Sobic010G092400 Sobic007G196800--Sobic002G151400 Sobic001G401600 Sobic001G401600 Sobic007G196800--Sobic001G401600 Sobic001G116600--Sobic004G229200 Sobic002G345800 Sobic002G345800 Sobic001G116600--Sobic002G345800 Sobic002G284100 Sobic002G284100 Sobic001G116600--Sobic002G284100 Sobic001G289900 Sobic001G289900 Sobic001G116600--Sobic001G289900 Sobic006G160200 Sobic006G160200 Sobic001G116600--Sobic006G160200 Sobic002G196500 Sobic002G196500 Sobic001G116600--Sobic002G196500 Sobic006G202100 Sobic006G202100 Sobic001G116600--Sobic006G202100 Sobic004G267600 Sobic004G267600 Sobic001G116600--Sobic004G267600 Sobic001G440900 Sobic001G440900 Sobic001G116600--Sobic001G440900 Sobic006G189200--Sobic001G404700 Sobic006G134900 Sobic006G134900 Sobic006G189200--Sobic006G134900 Sobic004G208100 Sobic004G208100 Sobic006G189200--Sobic004G208100 Sobic001G169800 Sobic001G169800 Sobic006G189200--Sobic001G169800 Sobic006G189200--Sobic004G229200 Sobic006G189200--Sobic006G081800 Sobic006G189200--Sobic001G108400 Sobic006G189200--Sobic002G151400 Sobic001G026600 Sobic001G026600 Sobic006G189200--Sobic001G026600 Sobic001G404700--Sobic006G189200 Sobic001G404700--Sobic001G108400 Sobic003G412800 Sobic003G412800 Sobic001G404700--Sobic003G412800 Sobic010G079100 Sobic010G079100 Sobic001G404700--Sobic010G079100 Sobic001G404700--Sobic004G208100 Sobic004G309800 Sobic004G309800 Sobic001G404700--Sobic004G309800 Sobic003G230000 Sobic003G230000 Sobic001G404700--Sobic003G230000 Sobic001G404700--Sobic002G151400 Sobic002G230800 Sobic002G230800 Sobic001G404700--Sobic002G230800 Sobic007G044400 Sobic007G044400 Sobic001G108400--Sobic007G044400 Sobic003G410600 Sobic003G410600 Sobic001G108400--Sobic003G410600 Sobic002G313600 Sobic002G313600 Sobic001G108400--Sobic002G313600 Sobic009G001200 Sobic009G001200 Sobic001G108400--Sobic009G001200 Sobic001G108400--Sobic001G404700 Sobic006G207400 Sobic006G207400 Sobic001G108400--Sobic006G207400 Sobic003G017500 Sobic003G017500 Sobic001G108400--Sobic003G017500 Sobic001G108400--Sobic001G169800 Sobic001G108400--Sobic001G026600 Sobic001G142000 Sobic001G142000 Sobic004G075900--Sobic001G142000 Sobic001G105800 Sobic001G105800 Sobic004G075900--Sobic001G105800 Sobic007G007800 Sobic007G007800 Sobic004G075900--Sobic007G007800 Sobic001G013400 Sobic001G013400 Sobic004G075900--Sobic001G013400 Sobic004G331600 Sobic004G331600 Sobic004G075900--Sobic004G331600 Sobic007G100600 Sobic007G100600 Sobic004G075900--Sobic007G100600 Sobic003G444300 Sobic003G444300 Sobic004G075900--Sobic003G444300 Sobic001G456500 Sobic001G456500 Sobic004G075900--Sobic001G456500 Sobic003G387700 Sobic003G387700 Sobic004G075900--Sobic003G387700 Sobic002G246900 Sobic002G246900 Sobic003G134500--Sobic002G246900 Sobic002G372200 Sobic002G372200 Sobic003G134500--Sobic002G372200 Sobic003G134500--Sobic007G196800 Sobic003G134500--Sobic003G442300 Sobic003G134500--Sobic001G401600 Sobic009G181500 Sobic009G181500 Sobic003G134500--Sobic009G181500 Sobic001G175000 Sobic001G175000 Sobic003G134500--Sobic001G175000 Sobic001G300400 Sobic001G300400 Sobic003G134500--Sobic001G300400 Sobic002G426800 Sobic002G426800 Sobic003G134500--Sobic002G426800 Sobic002G289800--Sobic001G289900 Sobic007G017700 Sobic007G017700 Sobic002G289800--Sobic007G017700 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic004G327600 Sobic004G327600 Sobic002G289800--Sobic004G327600 Sobic007G132900 Sobic007G132900 Sobic002G289800--Sobic007G132900 Sobic010G222100 Sobic010G222100 Sobic002G289800--Sobic010G222100 Sobic002G289800--Sobic001G300400 Sobic002G289800--Sobic006G081800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.