Gene annotation
Transcriptome id Sobic.003G406600.1
Synonym SbSBP6;SbSBP6, Sb03g044160
Functional annotation Highest expression level in primordial inflorescence (PubMedID : 27501690)
"GW8/OsPL16(Ortholog in rice:Wang et al., 2012)" (PubMedID : 31659873)
OsSPL2 - SBP-box gene family member, expressed
UniProt C5XGC0
Pfam PF03110
Panther DB PTHR31251 PTHR31251:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G50570 : Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
RAP-DB (Rice) LOC_Os01g69830.1 : OsSPL2 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a034758 , Zm00025a042001 , Zm00025a005100 , Zm00025a019166 , Zm00025a039285 , Zm00025a047584 , Zm00025a026243 , Zm00025a014306 , Zm00025a014209 , Zm00025a051683
Brachypodium KQJ98926 , KQK11266 , KQK11265 , KQK11264 , PNT66007 , KQJ88495 , PNT73493 , PNT73492 , PNT68391 , PNT68392 , PNT68393 , KQJ90930 , KQJ99120
Barley HORVU5Hr1G073440.10 , HORVU3Hr1G094730.8 , HORVU3Hr1G094730.9 , HORVU3Hr1G094730.2 , HORVU3Hr1G094730.3 , HORVU3Hr1G094730.1 , HORVU3Hr1G094730.6 , HORVU3Hr1G094730.7 , HORVU3Hr1G094730.4 , HORVU3Hr1G094730.5 , HORVU3Hr1G050350.5 , HORVU3Hr1G050350.6 , HORVU3Hr1G050350.7 , HORVU3Hr1G050350.1 , HORVU3Hr1G050350.3 , HORVU3Hr1G094730.10 , HORVU3Hr1G094730.11 , HORVU3Hr1G094730.12 , HORVU6Hr1G030490.1 , HORVU6Hr1G030490.2 , HORVU6Hr1G030490.3 , HORVU6Hr1G030490.4 , HORVU5Hr1G073440.9 , HORVU5Hr1G073440.8 , HORVU5Hr1G073440.5 , HORVU5Hr1G073440.4 , HORVU5Hr1G073440.7 , HORVU5Hr1G073440.6 , HORVU5Hr1G073440.1 , HORVU5Hr1G073440.3 , HORVU5Hr1G073440.2
Wheat TraesCS6A02G152000 , TraesCS7D02G245200 , TraesCS7D02G245200 , TraesCS5D02G273900 , TraesCS5B02G265600 , TraesCS5D02G273900 , TraesCS2A02G502300 , TraesCS7B02G144900 , TraesCS7B02G144900 , TraesCS5A02G265900 , TraesCS5A02G265900 , TraesCS6B02G180300 , TraesCS3D02G425800 , TraesCS3A02G432500 , TraesCS6D02G142100 , TraesCS7A02G495100 , TraesCS7A02G495100 , TraesCS3B02G468400 , TraesCS2B02G530400 , TraesCS2D02G502900 , TraesCS2D02G502900 , TraesCS7A02G246500 , TraesCS5B02G265600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G173700 tetraspanin family protein, putative, expressed -
2 Sobic.001G116600 inactive receptor kinase At2g26730 precursor, putative, expressed -
3 Sobic.007G023100 CCT motif family protein, expressed -
4 Sobic.003G356600 ATROPGEF7/ROPGEF7, putative, expressed -
5 Sobic.007G070200 tentative name(PubMedID : 31536532)@OsFBX265 - F-box domain containing protein, expressed -
6 Sobic.001G467200 NPGR1, putative, expressed -
7 Sobic.006G046600 expressed protein -
8 Sobic.010G029000 expressed protein -
9 Sobic.003G230000 serine/threonine-protein kinase, putative, expressed -
10 Sobic.002G353200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsBZR1(Ortholog in rice:Zhu et al. (2015))(PubMedID : 31659861)@BES1/BZR1 homolog protein, putative, expressed K14503: brassinosteroid resistant 1/2
11 Sobic.003G302000 expressed protein -
12 Sobic.010G095800 expressed protein -
13 Sobic.004G004600 IQ calmodulin-binding motif family protein, putative, expressed -
14 Sobic.005G199700 leucine-rich repeat family protein, putative, expressed -
15 Sobic.001G488900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
16 Sobic.001G142200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
17 Sobic.009G146700 universal stress protein domain containing protein, putative, expressed -
18 Sobic.008G044600 expressed protein -
19 Sobic.010G129700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
20 Sobic.001G289900 AT hook motif domain containing protein, expressed -


Gene co-expression network
sample Sobic003G406600 Sobic003G406600 Sobic010G173700 Sobic010G173700 Sobic003G406600--Sobic010G173700 Sobic001G116600 Sobic001G116600 Sobic003G406600--Sobic001G116600 Sobic007G023100 Sobic007G023100 Sobic003G406600--Sobic007G023100 Sobic003G356600 Sobic003G356600 Sobic003G406600--Sobic003G356600 Sobic007G070200 Sobic007G070200 Sobic003G406600--Sobic007G070200 Sobic001G467200 Sobic001G467200 Sobic003G406600--Sobic001G467200 Sobic006G046600 Sobic006G046600 Sobic003G406600--Sobic006G046600 Sobic010G029000 Sobic010G029000 Sobic003G406600--Sobic010G029000 Sobic003G230000 Sobic003G230000 Sobic003G406600--Sobic003G230000 Sobic010G173700--Sobic003G406600 Sobic010G173700--Sobic006G046600 Sobic005G032600 Sobic005G032600 Sobic010G173700--Sobic005G032600 Sobic001G079900 Sobic001G079900 Sobic010G173700--Sobic001G079900 Sobic004G359500 Sobic004G359500 Sobic010G173700--Sobic004G359500 Sobic001G384700 Sobic001G384700 Sobic010G173700--Sobic001G384700 Sobic006G022400 Sobic006G022400 Sobic010G173700--Sobic006G022400 Sobic006G185800 Sobic006G185800 Sobic010G173700--Sobic006G185800 Sobic001G113800 Sobic001G113800 Sobic010G173700--Sobic001G113800 Sobic004G229200 Sobic004G229200 Sobic001G116600--Sobic004G229200 Sobic002G345800 Sobic002G345800 Sobic001G116600--Sobic002G345800 Sobic002G284100 Sobic002G284100 Sobic001G116600--Sobic002G284100 Sobic001G289900 Sobic001G289900 Sobic001G116600--Sobic001G289900 Sobic006G160200 Sobic006G160200 Sobic001G116600--Sobic006G160200 Sobic002G196500 Sobic002G196500 Sobic001G116600--Sobic002G196500 Sobic006G202100 Sobic006G202100 Sobic001G116600--Sobic006G202100 Sobic004G267600 Sobic004G267600 Sobic001G116600--Sobic004G267600 Sobic001G440900 Sobic001G440900 Sobic001G116600--Sobic001G440900 Sobic003G090600 Sobic003G090600 Sobic007G023100--Sobic003G090600 Sobic007G147200 Sobic007G147200 Sobic007G023100--Sobic007G147200 Sobic002G430700 Sobic002G430700 Sobic007G023100--Sobic002G430700 Sobic006G107500 Sobic006G107500 Sobic007G023100--Sobic006G107500 Sobic005G062600 Sobic005G062600 Sobic007G023100--Sobic005G062600 Sobic007G033700 Sobic007G033700 Sobic007G023100--Sobic007G033700 Sobic003G019900 Sobic003G019900 Sobic007G023100--Sobic003G019900 Sobic007G128100 Sobic007G128100 Sobic007G023100--Sobic007G128100 Sobic006G163300 Sobic006G163300 Sobic007G023100--Sobic006G163300 Sobic004G274600 Sobic004G274600 Sobic003G356600--Sobic004G274600 Sobic004G211700 Sobic004G211700 Sobic003G356600--Sobic004G211700 Sobic002G363300 Sobic002G363300 Sobic003G356600--Sobic002G363300 Sobic001G199400 Sobic001G199400 Sobic003G356600--Sobic001G199400 Sobic008G008100 Sobic008G008100 Sobic003G356600--Sobic008G008100 Sobic009G146700 Sobic009G146700 Sobic003G356600--Sobic009G146700 Sobic003G070600 Sobic003G070600 Sobic003G356600--Sobic003G070600 Sobic002G312200 Sobic002G312200 Sobic003G356600--Sobic002G312200 Sobic010G014700 Sobic010G014700 Sobic003G356600--Sobic010G014700 Sobic007G070200--Sobic007G023100 Sobic001G137600 Sobic001G137600 Sobic007G070200--Sobic001G137600 Sobic007G070200--Sobic003G406600 Sobic004G352100 Sobic004G352100 Sobic007G070200--Sobic004G352100 Sobic005G125000 Sobic005G125000 Sobic007G070200--Sobic005G125000 Sobic010G276600 Sobic010G276600 Sobic007G070200--Sobic010G276600 Sobic007G070200--Sobic006G046600 Sobic003G010700 Sobic003G010700 Sobic007G070200--Sobic003G010700 Sobic007G070200--Sobic007G033700 Sobic001G467200--Sobic003G406600 Sobic004G004600 Sobic004G004600 Sobic001G467200--Sobic004G004600 Sobic010G095800 Sobic010G095800 Sobic001G467200--Sobic010G095800 Sobic001G467200--Sobic003G356600 Sobic002G400600 Sobic002G400600 Sobic001G467200--Sobic002G400600 Sobic002G115200 Sobic002G115200 Sobic001G467200--Sobic002G115200 Sobic001G467200--Sobic010G276600 Sobic001G467200--Sobic003G230000 Sobic003G302000 Sobic003G302000 Sobic001G467200--Sobic003G302000 Sobic001G494100 Sobic001G494100 Sobic006G046600--Sobic001G494100 Sobic006G046600--Sobic001G384700 Sobic009G141700 Sobic009G141700 Sobic006G046600--Sobic009G141700 Sobic006G046600--Sobic010G173700 Sobic002G216600 Sobic002G216600 Sobic006G046600--Sobic002G216600 Sobic008G169400 Sobic008G169400 Sobic006G046600--Sobic008G169400 Sobic006G046600--Sobic001G079900 Sobic008G044600 Sobic008G044600 Sobic006G046600--Sobic008G044600 Sobic003G277900 Sobic003G277900 Sobic006G046600--Sobic003G277900 Sobic003G100700 Sobic003G100700 Sobic010G029000--Sobic003G100700 Sobic010G029000--Sobic006G160200 Sobic001G231200 Sobic001G231200 Sobic010G029000--Sobic001G231200 Sobic010G029000--Sobic001G116600 Sobic010G029000--Sobic004G267600 Sobic003G013000 Sobic003G013000 Sobic010G029000--Sobic003G013000 Sobic001G522300 Sobic001G522300 Sobic010G029000--Sobic001G522300 Sobic010G029000--Sobic001G440900 Sobic001G487200 Sobic001G487200 Sobic010G029000--Sobic001G487200 Sobic002G227900 Sobic002G227900 Sobic003G230000--Sobic002G227900 Sobic003G307200 Sobic003G307200 Sobic003G230000--Sobic003G307200 Sobic001G493900 Sobic001G493900 Sobic003G230000--Sobic001G493900 Sobic003G230000--Sobic004G267600 Sobic002G394500 Sobic002G394500 Sobic003G230000--Sobic002G394500 Sobic002G360500 Sobic002G360500 Sobic003G230000--Sobic002G360500 Sobic003G230000--Sobic001G199400 Sobic006G219500 Sobic006G219500 Sobic003G230000--Sobic006G219500 Sobic003G230000--Sobic001G231200
Octagon: transcription factors


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