Gene annotation
Transcriptome id Sobic.007G070200.7,Sobic.007G070200.3,Sobic.007G070200.6,Sobic.007G070200.4
Synonym Nuclear Factor Y, Sb07g005550, SbNF-YB12
Functional annotation tentative name (PubMedID : 31536532)
OsFBX265 - F-box domain containing protein, expressed
UniProt A0A1B6PG60
Pfam PF12937
Panther DB PTHR24006 PTHR24006:SF122
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G05460 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os08g09410.1 : OsFBX265 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G070200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G023100 CCT motif family protein, expressed -
2 Sobic.001G137600 ankyrin, putative, expressed -
3 Sobic.003G406600 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GW8/OsPL16(Ortholog in rice:Wang et al., 2012)"(PubMedID : 31659873)@OsSPL2 - SBP-box gene family member, expressed -
4 Sobic.004G352100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
5 Sobic.005G125000 ATP binding protein, putative, expressed K17592: sacsin
6 Sobic.010G276600 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
7 Sobic.006G046600 expressed protein -
8 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
9 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
10 Sobic.008G044600 expressed protein -
11 Sobic.007G087800 expressed protein K06085: SSX2IP, synovial sarcoma, X breakpoint 2 interacting protein
12 Sobic.010G026100 expressed protein -
13 Sobic.006G274200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Eukaryotic aspartyl protease domain containing protein, expressed -
14 Sobic.010G087500 heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
15 Sobic.003G338700 LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.003G002000 expressed protein -
17 Sobic.009G146700 universal stress protein domain containing protein, putative, expressed -
18 Sobic.006G202100 WD repeat-containing protein, putative, expressed -
19 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
20 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)


Gene co-expression network
sample Sobic007G070200 Sobic007G070200 Sobic007G023100 Sobic007G023100 Sobic007G070200--Sobic007G023100 Sobic001G137600 Sobic001G137600 Sobic007G070200--Sobic001G137600 Sobic003G406600 Sobic003G406600 Sobic007G070200--Sobic003G406600 Sobic004G352100 Sobic004G352100 Sobic007G070200--Sobic004G352100 Sobic005G125000 Sobic005G125000 Sobic007G070200--Sobic005G125000 Sobic010G276600 Sobic010G276600 Sobic007G070200--Sobic010G276600 Sobic006G046600 Sobic006G046600 Sobic007G070200--Sobic006G046600 Sobic003G010700 Sobic003G010700 Sobic007G070200--Sobic003G010700 Sobic007G033700 Sobic007G033700 Sobic007G070200--Sobic007G033700 Sobic003G090600 Sobic003G090600 Sobic007G023100--Sobic003G090600 Sobic007G147200 Sobic007G147200 Sobic007G023100--Sobic007G147200 Sobic002G430700 Sobic002G430700 Sobic007G023100--Sobic002G430700 Sobic006G107500 Sobic006G107500 Sobic007G023100--Sobic006G107500 Sobic005G062600 Sobic005G062600 Sobic007G023100--Sobic005G062600 Sobic007G023100--Sobic007G033700 Sobic003G019900 Sobic003G019900 Sobic007G023100--Sobic003G019900 Sobic007G128100 Sobic007G128100 Sobic007G023100--Sobic007G128100 Sobic006G163300 Sobic006G163300 Sobic007G023100--Sobic006G163300 Sobic001G137600--Sobic007G033700 Sobic006G271600 Sobic006G271600 Sobic001G137600--Sobic006G271600 Sobic009G243000 Sobic009G243000 Sobic001G137600--Sobic009G243000 Sobic003G046400 Sobic003G046400 Sobic001G137600--Sobic003G046400 Sobic001G455900 Sobic001G455900 Sobic001G137600--Sobic001G455900 Sobic003G117200 Sobic003G117200 Sobic001G137600--Sobic003G117200 Sobic001G137600--Sobic006G163300 Sobic001G071600 Sobic001G071600 Sobic001G137600--Sobic001G071600 Sobic010G194600 Sobic010G194600 Sobic001G137600--Sobic010G194600 Sobic010G173700 Sobic010G173700 Sobic003G406600--Sobic010G173700 Sobic001G116600 Sobic001G116600 Sobic003G406600--Sobic001G116600 Sobic003G406600--Sobic007G023100 Sobic003G356600 Sobic003G356600 Sobic003G406600--Sobic003G356600 Sobic003G406600--Sobic007G070200 Sobic001G467200 Sobic001G467200 Sobic003G406600--Sobic001G467200 Sobic003G406600--Sobic006G046600 Sobic010G029000 Sobic010G029000 Sobic003G406600--Sobic010G029000 Sobic003G230000 Sobic003G230000 Sobic003G406600--Sobic003G230000 Sobic007G209600 Sobic007G209600 Sobic004G352100--Sobic007G209600 Sobic002G203500 Sobic002G203500 Sobic004G352100--Sobic002G203500 Sobic010G026100 Sobic010G026100 Sobic004G352100--Sobic010G026100 Sobic002G184400 Sobic002G184400 Sobic004G352100--Sobic002G184400 Sobic008G151600 Sobic008G151600 Sobic004G352100--Sobic008G151600 Sobic004G352100--Sobic007G070200 Sobic009G087700 Sobic009G087700 Sobic004G352100--Sobic009G087700 Sobic007G161600 Sobic007G161600 Sobic004G352100--Sobic007G161600 Sobic006G202100 Sobic006G202100 Sobic004G352100--Sobic006G202100 Sobic003G066700 Sobic003G066700 Sobic005G125000--Sobic003G066700 Sobic005G125000--Sobic001G137600 Sobic005G125000--Sobic007G128100 Sobic005G125000--Sobic007G070200 Sobic005G125000--Sobic007G033700 Sobic003G027800 Sobic003G027800 Sobic005G125000--Sobic003G027800 Sobic005G125000--Sobic007G161600 Sobic004G220200 Sobic004G220200 Sobic005G125000--Sobic004G220200 Sobic005G125000--Sobic010G276600 Sobic010G276600--Sobic003G010700 Sobic010G168700 Sobic010G168700 Sobic010G276600--Sobic010G168700 Sobic006G273600 Sobic006G273600 Sobic010G276600--Sobic006G273600 Sobic005G199700 Sobic005G199700 Sobic010G276600--Sobic005G199700 Sobic007G170100 Sobic007G170100 Sobic010G276600--Sobic007G170100 Sobic003G338700 Sobic003G338700 Sobic010G276600--Sobic003G338700 Sobic001G379900 Sobic001G379900 Sobic010G276600--Sobic001G379900 Sobic010G276600--Sobic006G163300 Sobic001G286700 Sobic001G286700 Sobic010G276600--Sobic001G286700 Sobic001G494100 Sobic001G494100 Sobic006G046600--Sobic001G494100 Sobic001G384700 Sobic001G384700 Sobic006G046600--Sobic001G384700 Sobic009G141700 Sobic009G141700 Sobic006G046600--Sobic009G141700 Sobic006G046600--Sobic010G173700 Sobic002G216600 Sobic002G216600 Sobic006G046600--Sobic002G216600 Sobic008G169400 Sobic008G169400 Sobic006G046600--Sobic008G169400 Sobic001G079900 Sobic001G079900 Sobic006G046600--Sobic001G079900 Sobic008G044600 Sobic008G044600 Sobic006G046600--Sobic008G044600 Sobic003G277900 Sobic003G277900 Sobic006G046600--Sobic003G277900 Sobic002G363300 Sobic002G363300 Sobic003G010700--Sobic002G363300 Sobic003G010700--Sobic006G273600 Sobic003G010700--Sobic007G170100 Sobic003G010700--Sobic006G163300 Sobic003G010700--Sobic005G199700 Sobic002G360600 Sobic002G360600 Sobic003G010700--Sobic002G360600 Sobic009G146700 Sobic009G146700 Sobic003G010700--Sobic009G146700 Sobic003G010700--Sobic003G338700 Sobic003G010700--Sobic010G276600 Sobic007G033700--Sobic003G046400 Sobic007G033700--Sobic009G243000 Sobic007G033700--Sobic001G137600 Sobic007G033700--Sobic001G455900 Sobic007G033700--Sobic006G163300 Sobic010G070900 Sobic010G070900 Sobic007G033700--Sobic010G070900 Sobic007G033700--Sobic006G271600 Sobic007G033700--Sobic001G071600 Sobic004G237000 Sobic004G237000 Sobic007G033700--Sobic004G237000
Octagon: transcription factors


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