Gene annotation
Transcriptome id Sobic.004G352100.1
Synonym Sb04g037880
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
AT hook motif domain containing protein, expressed
UniProt A0A1Z5RQI6
Pfam PF03479
Panther DB PTHR31500 PTHR31500:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45850 : AT hook motif DNA-binding family protein
RAP-DB (Rice) LOC_Os02g57820.1 : AT hook motif domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032740 , Zm00025a022645
Brachypodium KQK16530 , KQK16531 , KQK01454
Barley -
Wheat TraesCS6A02G403700
Populus -


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cDNA sequences
Sobic.004G352100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G209600 ENT domain containing protein, expressed -
2 Sobic.002G203500 protein binding protein, putative, expressed -
3 Sobic.010G026100 expressed protein -
4 Sobic.002G184400 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
5 Sobic.008G151600 PMR5, putative, expressed -
6 Sobic.007G070200 tentative name(PubMedID : 31536532)@OsFBX265 - F-box domain containing protein, expressed -
7 Sobic.009G087700 proline-rich family protein, putative, expressed -
8 Sobic.007G161600 SET domain containing protein, expressed -
9 Sobic.006G202100 WD repeat-containing protein, putative, expressed -
10 Sobic.002G229900 heat shock protein DnaJ, putative, expressed -
11 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
12 Sobic.006G221800 OsFBX46 - F-box domain containing protein, expressed -
13 Sobic.003G027800 protein kinase family protein, putative, expressed -
14 Sobic.009G083600 OsCML18 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
15 Sobic.003G342900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
16 Sobic.007G128100 expressed protein -
17 Sobic.007G023100 CCT motif family protein, expressed -
18 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
19 Sobic.010G276600 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
20 Sobic.005G062600 MLO domain containing protein, putative, expressed K08472: mlo protein


Gene co-expression network
sample Sobic004G352100 Sobic004G352100 Sobic007G209600 Sobic007G209600 Sobic004G352100--Sobic007G209600 Sobic002G203500 Sobic002G203500 Sobic004G352100--Sobic002G203500 Sobic010G026100 Sobic010G026100 Sobic004G352100--Sobic010G026100 Sobic002G184400 Sobic002G184400 Sobic004G352100--Sobic002G184400 Sobic008G151600 Sobic008G151600 Sobic004G352100--Sobic008G151600 Sobic007G070200 Sobic007G070200 Sobic004G352100--Sobic007G070200 Sobic009G087700 Sobic009G087700 Sobic004G352100--Sobic009G087700 Sobic007G161600 Sobic007G161600 Sobic004G352100--Sobic007G161600 Sobic006G202100 Sobic006G202100 Sobic004G352100--Sobic006G202100 Sobic001G211500 Sobic001G211500 Sobic007G209600--Sobic001G211500 Sobic004G287100 Sobic004G287100 Sobic007G209600--Sobic004G287100 Sobic002G219900 Sobic002G219900 Sobic007G209600--Sobic002G219900 Sobic003G212600 Sobic003G212600 Sobic007G209600--Sobic003G212600 Sobic001G300000 Sobic001G300000 Sobic007G209600--Sobic001G300000 Sobic003G311500 Sobic003G311500 Sobic007G209600--Sobic003G311500 Sobic001G210000 Sobic001G210000 Sobic007G209600--Sobic001G210000 Sobic004G343200 Sobic004G343200 Sobic007G209600--Sobic004G343200 Sobic007G209600--Sobic004G352100 Sobic007G159200 Sobic007G159200 Sobic002G203500--Sobic007G159200 Sobic009G141700 Sobic009G141700 Sobic002G203500--Sobic009G141700 Sobic007G128100 Sobic007G128100 Sobic002G203500--Sobic007G128100 Sobic002G203500--Sobic004G352100 Sobic007G125700 Sobic007G125700 Sobic002G203500--Sobic007G125700 Sobic001G043500 Sobic001G043500 Sobic002G203500--Sobic001G043500 Sobic007G023100 Sobic007G023100 Sobic002G203500--Sobic007G023100 Sobic002G203500--Sobic007G161600 Sobic002G425200 Sobic002G425200 Sobic002G203500--Sobic002G425200 Sobic002G050700 Sobic002G050700 Sobic010G026100--Sobic002G050700 Sobic006G221800 Sobic006G221800 Sobic010G026100--Sobic006G221800 Sobic004G003700 Sobic004G003700 Sobic010G026100--Sobic004G003700 Sobic001G101700 Sobic001G101700 Sobic010G026100--Sobic001G101700 Sobic005G062600 Sobic005G062600 Sobic010G026100--Sobic005G062600 Sobic001G143400 Sobic001G143400 Sobic010G026100--Sobic001G143400 Sobic001G379900 Sobic001G379900 Sobic010G026100--Sobic001G379900 Sobic001G006800 Sobic001G006800 Sobic010G026100--Sobic001G006800 Sobic006G232900 Sobic006G232900 Sobic010G026100--Sobic006G232900 Sobic002G184400--Sobic002G219900 Sobic002G184400--Sobic001G300000 Sobic010G041000 Sobic010G041000 Sobic002G184400--Sobic010G041000 Sobic002G184400--Sobic004G352100 Sobic003G209400 Sobic003G209400 Sobic002G184400--Sobic003G209400 Sobic002G229900 Sobic002G229900 Sobic002G184400--Sobic002G229900 Sobic004G111000 Sobic004G111000 Sobic002G184400--Sobic004G111000 Sobic002G184400--Sobic007G125700 Sobic003G098900 Sobic003G098900 Sobic002G184400--Sobic003G098900 Sobic003G019900 Sobic003G019900 Sobic008G151600--Sobic003G019900 Sobic008G151600--Sobic006G221800 Sobic006G274200 Sobic006G274200 Sobic008G151600--Sobic006G274200 Sobic001G493900 Sobic001G493900 Sobic008G151600--Sobic001G493900 Sobic008G151600--Sobic001G101700 Sobic010G077000 Sobic010G077000 Sobic008G151600--Sobic010G077000 Sobic008G151600--Sobic007G161600 Sobic005G032600 Sobic005G032600 Sobic008G151600--Sobic005G032600 Sobic007G147200 Sobic007G147200 Sobic008G151600--Sobic007G147200 Sobic007G070200--Sobic007G023100 Sobic001G137600 Sobic001G137600 Sobic007G070200--Sobic001G137600 Sobic003G406600 Sobic003G406600 Sobic007G070200--Sobic003G406600 Sobic007G070200--Sobic004G352100 Sobic005G125000 Sobic005G125000 Sobic007G070200--Sobic005G125000 Sobic010G276600 Sobic010G276600 Sobic007G070200--Sobic010G276600 Sobic006G046600 Sobic006G046600 Sobic007G070200--Sobic006G046600 Sobic003G010700 Sobic003G010700 Sobic007G070200--Sobic003G010700 Sobic007G033700 Sobic007G033700 Sobic007G070200--Sobic007G033700 Sobic009G087700--Sobic006G221800 Sobic009G087700--Sobic004G003700 Sobic001G101900 Sobic001G101900 Sobic009G087700--Sobic001G101900 Sobic009G087700--Sobic007G147200 Sobic008G125700 Sobic008G125700 Sobic009G087700--Sobic008G125700 Sobic009G087700--Sobic001G101700 Sobic002G360500 Sobic002G360500 Sobic009G087700--Sobic002G360500 Sobic001G496400 Sobic001G496400 Sobic009G087700--Sobic001G496400 Sobic001G393200 Sobic001G393200 Sobic009G087700--Sobic001G393200 Sobic007G161600--Sobic008G151600 Sobic007G161600--Sobic005G062600 Sobic007G161600--Sobic007G147200 Sobic007G161600--Sobic001G043500 Sobic007G161600--Sobic003G019900 Sobic010G092400 Sobic010G092400 Sobic007G161600--Sobic010G092400 Sobic006G163300 Sobic006G163300 Sobic007G161600--Sobic006G163300 Sobic003G008800 Sobic003G008800 Sobic007G161600--Sobic003G008800 Sobic003G046400 Sobic003G046400 Sobic007G161600--Sobic003G046400 Sobic006G202150 Sobic006G202150 Sobic006G202100--Sobic006G202150 Sobic001G116600 Sobic001G116600 Sobic006G202100--Sobic001G116600 Sobic006G202100--Sobic004G352100 Sobic004G220200 Sobic004G220200 Sobic006G202100--Sobic004G220200 Sobic009G006900 Sobic009G006900 Sobic006G202100--Sobic009G006900 Sobic006G202100--Sobic008G151600 Sobic003G131100 Sobic003G131100 Sobic006G202100--Sobic003G131100 Sobic002G196500 Sobic002G196500 Sobic006G202100--Sobic002G196500 Sobic006G202100--Sobic006G221800
Octagon: transcription factors


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