Gene annotation
Transcriptome id Sobic.002G184400.1
Synonym SbERF21, RAP2.4, ethylene response factor 21, Sb02g023230
Functional annotation Not investigated (PubMedID : 23766026)
ethylene-responsive transcription factor, putative, expressed
UniProt A0A1B6QC62
Pfam PF00847
Panther DB PTHR31657 PTHR31657:SF5
NCBI CDD -
KEGG Orthology K09286; EREBP-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G39780 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os09g20350.1 : ethylene-responsive transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a053203 , Zm00025a046712 , Zm00025a035951 , Zm00025a055020 , Zm00025a022855 , Zm00025a033320 , Zm00025a057002 , Zm00025a001066 , Zm00025a044642 , Zm00025a045437 , Zm00025a021006 , Zm00025a022123 , Zm00025a033171 , Zm00025a009843 , Zm00025a000671 , Zm00025a049497
Brachypodium KQJ90021 , KQJ94703 , PNT61818 , KQK00491 , KQK01869 , PNT62439 , KQK23180 , KQK18916 , KQJ98221 , PNT67305 , KQJ86112 , KQJ83714
Barley HORVU6Hr1G060220.6 , HORVU6Hr1G060220.7 , HORVU6Hr1G060220.4 , HORVU6Hr1G060220.5 , HORVU6Hr1G060220.3 , HORVU6Hr1G060220.2 , HORVU6Hr1G060220.1 , HORVU5Hr1G018720.1 , HORVU7Hr1G037180.2 , HORVU3Hr1G030310.1 , HORVU7Hr1G037180.3 , HORVU7Hr1G037180.1 , HORVU6Hr1G074970.3 , HORVU6Hr1G074970.2 , HORVU6Hr1G074970.1 , HORVU6Hr1G074970.4 , HORVU5Hr1G058270.1 , HORVU5Hr1G058270.3 , HORVU5Hr1G058270.2 , HORVU5Hr1G058270.5 , HORVU5Hr1G058270.4 , HORVU5Hr1G058270.6 , HORVU1Hr1G063100.1 , HORVU4Hr1G071890.3 , HORVU4Hr1G071890.2 , HORVU4Hr1G000960.1 , HORVU6Hr1G060140.3 , HORVU6Hr1G060140.1
Wheat TraesCS5D02G200900 , TraesCS5B02G193200 , TraesCS2A02G373700 , TraesCS4A02G035400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G184400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
2 Sobic.001G300000 - -
3 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms
4 Sobic.004G352100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
5 Sobic.003G209400 expressed protein -
6 Sobic.002G229900 heat shock protein DnaJ, putative, expressed -
7 Sobic.004G111000 bromodomain containing protein, expressed -
8 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
9 Sobic.003G098900 - -
10 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
11 Sobic.001G144600 parafibromin, putative, expressed K15175: parafibromin
12 Sobic.002G430900 PWWP domain containing protein, expressed -
13 Sobic.006G280100 SET domain containing protein, expressed -
14 Sobic.002G203500 protein binding protein, putative, expressed -
15 Sobic.009G101000 - -
16 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
17 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
18 Sobic.009G031500 agenet domain containing protein, putative, expressed -
19 Sobic.008G080500 expressed protein -
20 Sobic.003G027800 protein kinase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G184400 Sobic002G184400 Sobic002G219900 Sobic002G219900 Sobic002G184400--Sobic002G219900 Sobic001G300000 Sobic001G300000 Sobic002G184400--Sobic001G300000 Sobic010G041000 Sobic010G041000 Sobic002G184400--Sobic010G041000 Sobic004G352100 Sobic004G352100 Sobic002G184400--Sobic004G352100 Sobic003G209400 Sobic003G209400 Sobic002G184400--Sobic003G209400 Sobic002G229900 Sobic002G229900 Sobic002G184400--Sobic002G229900 Sobic004G111000 Sobic004G111000 Sobic002G184400--Sobic004G111000 Sobic007G125700 Sobic007G125700 Sobic002G184400--Sobic007G125700 Sobic003G098900 Sobic003G098900 Sobic002G184400--Sobic003G098900 Sobic002G430900 Sobic002G430900 Sobic002G219900--Sobic002G430900 Sobic010G149600 Sobic010G149600 Sobic002G219900--Sobic010G149600 Sobic002G219900--Sobic007G125700 Sobic001G395200 Sobic001G395200 Sobic002G219900--Sobic001G395200 Sobic006G280100 Sobic006G280100 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic001G143600 Sobic001G143600 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic003G177000 Sobic003G177000 Sobic001G300000--Sobic003G177000 Sobic001G541000 Sobic001G541000 Sobic001G300000--Sobic001G541000 Sobic007G209600 Sobic007G209600 Sobic001G300000--Sobic007G209600 Sobic007G159200 Sobic007G159200 Sobic001G300000--Sobic007G159200 Sobic007G184100 Sobic007G184100 Sobic001G300000--Sobic007G184100 Sobic008G080500 Sobic008G080500 Sobic001G300000--Sobic008G080500 Sobic001G300000--Sobic006G280100 Sobic003G135500 Sobic003G135500 Sobic001G300000--Sobic003G135500 Sobic001G211500 Sobic001G211500 Sobic001G300000--Sobic001G211500 Sobic004G305100 Sobic004G305100 Sobic010G041000--Sobic004G305100 Sobic010G041000--Sobic004G111000 Sobic010G041000--Sobic003G098900 Sobic001G008000 Sobic001G008000 Sobic010G041000--Sobic001G008000 Sobic010G041000--Sobic003G361400 Sobic001G502600 Sobic001G502600 Sobic010G041000--Sobic001G502600 Sobic002G110500 Sobic002G110500 Sobic010G041000--Sobic002G110500 Sobic004G038100 Sobic004G038100 Sobic010G041000--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic010G041000--Sobic007G059700 Sobic004G352100--Sobic007G209600 Sobic002G203500 Sobic002G203500 Sobic004G352100--Sobic002G203500 Sobic010G026100 Sobic010G026100 Sobic004G352100--Sobic010G026100 Sobic004G352100--Sobic002G184400 Sobic008G151600 Sobic008G151600 Sobic004G352100--Sobic008G151600 Sobic007G070200 Sobic007G070200 Sobic004G352100--Sobic007G070200 Sobic009G087700 Sobic009G087700 Sobic004G352100--Sobic009G087700 Sobic007G161600 Sobic007G161600 Sobic004G352100--Sobic007G161600 Sobic006G202100 Sobic006G202100 Sobic004G352100--Sobic006G202100 Sobic009G007700 Sobic009G007700 Sobic003G209400--Sobic009G007700 Sobic002G412700 Sobic002G412700 Sobic003G209400--Sobic002G412700 Sobic006G112700 Sobic006G112700 Sobic003G209400--Sobic006G112700 Sobic010G085200 Sobic010G085200 Sobic003G209400--Sobic010G085200 Sobic003G209400--Sobic008G080500 Sobic007G097400 Sobic007G097400 Sobic003G209400--Sobic007G097400 Sobic004G034700 Sobic004G034700 Sobic003G209400--Sobic004G034700 Sobic008G017100 Sobic008G017100 Sobic003G209400--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic003G209400--Sobic002G356600 Sobic002G229900--Sobic002G430900 Sobic002G229900--Sobic002G219900 Sobic002G229900--Sobic007G125700 Sobic002G229900--Sobic004G111000 Sobic001G120900 Sobic001G120900 Sobic002G229900--Sobic001G120900 Sobic002G394800 Sobic002G394800 Sobic002G229900--Sobic002G394800 Sobic002G229900--Sobic010G149600 Sobic009G141700 Sobic009G141700 Sobic002G229900--Sobic009G141700 Sobic002G229900--Sobic002G184400 Sobic004G285000 Sobic004G285000 Sobic004G111000--Sobic004G285000 Sobic003G409200 Sobic003G409200 Sobic004G111000--Sobic003G409200 Sobic010G215900 Sobic010G215900 Sobic004G111000--Sobic010G215900 Sobic007G044100 Sobic007G044100 Sobic004G111000--Sobic007G044100 Sobic010G279900 Sobic010G279900 Sobic004G111000--Sobic010G279900 Sobic004G043750 Sobic004G043750 Sobic004G111000--Sobic004G043750 Sobic006G056000 Sobic006G056000 Sobic004G111000--Sobic006G056000 Sobic004G086200 Sobic004G086200 Sobic004G111000--Sobic004G086200 Sobic002G263700 Sobic002G263700 Sobic004G111000--Sobic002G263700 Sobic007G125700--Sobic002G430900 Sobic004G207000 Sobic004G207000 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic010G269300 Sobic010G269300 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic007G125700--Sobic004G043750 Sobic007G125700--Sobic006G280100 Sobic003G098900--Sobic004G305100 Sobic003G098900--Sobic010G041000 Sobic003G098900--Sobic004G111000 Sobic003G098900--Sobic002G394800 Sobic003G098900--Sobic004G285000 Sobic003G098900--Sobic010G215900 Sobic003G098900--Sobic003G361400 Sobic003G436600 Sobic003G436600 Sobic003G098900--Sobic003G436600 Sobic002G177500 Sobic002G177500 Sobic003G098900--Sobic002G177500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.