Gene annotation
Transcriptome id Sobic.003G058900.4
Synonym TAF15b
Functional annotation TATA-binding protein-associated factor 2N, putative, expressed
UniProt A0A1B6Q1J6
Pfam PF14259 PF00641
Panther DB PTHR12999 PTHR12999:SF16
NCBI CDD -
KEGG Orthology K13098; TLS, RNA-binding protein FUS
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G58470 : TBP-associated factor 15B
RAP-DB (Rice) LOC_Os01g07070.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a003609 , Zm00025a003610 , Zm00025a035674 , Zm00025a023339
Brachypodium KQK02821 , KQK02820 , KQK02822
Barley HORVU3Hr1G018230.1 , HORVU3Hr1G018220.4 , HORVU3Hr1G018220.6 , HORVU3Hr1G018220.7 , HORVU3Hr1G018220.8 , HORVU3Hr1G018230.3 , HORVU3Hr1G018230.2
Wheat TraesCS3A02G100300 , TraesCS3D02G101100 , TraesCS3B02G117300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G099800 nucleic acid binding protein, putative, expressed -
2 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
3 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
4 Sobic.007G180000 RNA recognition motif containing protein, putative, expressed -
5 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
6 Sobic.002G058700 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
7 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
8 Sobic.001G144600 parafibromin, putative, expressed K15175: parafibromin
9 Sobic.001G335500 RNA-binding protein-like, putative, expressed -
10 Sobic.001G188700 OST3/OST6 family protein, putative, expressed K12669: OST3, oligosaccharyltransferase complex subunit gamma
11 Sobic.006G087400 expressed protein -
12 Sobic.001G136500 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
13 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
14 Sobic.001G426100 enolase, putative, expressed K01689: ENO, enolase
15 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
16 Sobic.010G197800 expressed protein -
17 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
18 Sobic.003G253400 expressed protein -
19 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
20 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -


Gene co-expression network
sample Sobic003G058900 Sobic003G058900 Sobic001G099800 Sobic001G099800 Sobic003G058900--Sobic001G099800 Sobic004G095300 Sobic004G095300 Sobic003G058900--Sobic004G095300 Sobic010G171100 Sobic010G171100 Sobic003G058900--Sobic010G171100 Sobic007G180000 Sobic007G180000 Sobic003G058900--Sobic007G180000 Sobic008G125000 Sobic008G125000 Sobic003G058900--Sobic008G125000 Sobic002G058700 Sobic002G058700 Sobic003G058900--Sobic002G058700 Sobic004G117800 Sobic004G117800 Sobic003G058900--Sobic004G117800 Sobic001G144600 Sobic001G144600 Sobic003G058900--Sobic001G144600 Sobic001G335500 Sobic001G335500 Sobic003G058900--Sobic001G335500 Sobic001G099800--Sobic003G058900 Sobic001G136500 Sobic001G136500 Sobic001G099800--Sobic001G136500 Sobic001G132900 Sobic001G132900 Sobic001G099800--Sobic001G132900 Sobic001G280400 Sobic001G280400 Sobic001G099800--Sobic001G280400 Sobic004G206300 Sobic004G206300 Sobic001G099800--Sobic004G206300 Sobic008G008300 Sobic008G008300 Sobic001G099800--Sobic008G008300 Sobic001G099800--Sobic008G125000 Sobic001G099800--Sobic004G117800 Sobic008G051100 Sobic008G051100 Sobic001G099800--Sobic008G051100 Sobic004G095300--Sobic010G171100 Sobic003G123000 Sobic003G123000 Sobic004G095300--Sobic003G123000 Sobic001G003500 Sobic001G003500 Sobic004G095300--Sobic001G003500 Sobic002G092300 Sobic002G092300 Sobic004G095300--Sobic002G092300 Sobic001G473600 Sobic001G473600 Sobic004G095300--Sobic001G473600 Sobic001G088100 Sobic001G088100 Sobic004G095300--Sobic001G088100 Sobic005G220000 Sobic005G220000 Sobic004G095300--Sobic005G220000 Sobic010G085200 Sobic010G085200 Sobic004G095300--Sobic010G085200 Sobic002G180000 Sobic002G180000 Sobic004G095300--Sobic002G180000 Sobic010G171100--Sobic004G095300 Sobic003G122500 Sobic003G122500 Sobic010G171100--Sobic003G122500 Sobic010G171100--Sobic003G123000 Sobic010G228700 Sobic010G228700 Sobic010G171100--Sobic010G228700 Sobic010G171100--Sobic005G220000 Sobic010G171100--Sobic010G085200 Sobic010G171100--Sobic001G088100 Sobic010G171100--Sobic002G058700 Sobic007G084100 Sobic007G084100 Sobic010G171100--Sobic007G084100 Sobic007G180000--Sobic003G123000 Sobic007G180000--Sobic003G058900 Sobic007G180000--Sobic002G058700 Sobic001G119900 Sobic001G119900 Sobic007G180000--Sobic001G119900 Sobic007G180000--Sobic003G122500 Sobic007G180000--Sobic004G117800 Sobic007G180000--Sobic010G171100 Sobic006G221400 Sobic006G221400 Sobic007G180000--Sobic006G221400 Sobic007G180000--Sobic004G095300 Sobic009G056300 Sobic009G056300 Sobic008G125000--Sobic009G056300 Sobic001G115500 Sobic001G115500 Sobic008G125000--Sobic001G115500 Sobic006G245700 Sobic006G245700 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic004G075200 Sobic004G075200 Sobic008G125000--Sobic004G075200 Sobic009G120500 Sobic009G120500 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic004G358900 Sobic004G358900 Sobic008G125000--Sobic004G358900 Sobic009G101300 Sobic009G101300 Sobic002G058700--Sobic009G101300 Sobic001G096000 Sobic001G096000 Sobic002G058700--Sobic001G096000 Sobic007G013300 Sobic007G013300 Sobic002G058700--Sobic007G013300 Sobic001G431000 Sobic001G431000 Sobic002G058700--Sobic001G431000 Sobic002G058700--Sobic010G171100 Sobic002G058700--Sobic001G003500 Sobic002G071000 Sobic002G071000 Sobic002G058700--Sobic002G071000 Sobic002G058700--Sobic004G095300 Sobic002G058700--Sobic004G117800 Sobic006G170200 Sobic006G170200 Sobic004G117800--Sobic006G170200 Sobic004G117800--Sobic008G051100 Sobic009G029700 Sobic009G029700 Sobic004G117800--Sobic009G029700 Sobic004G117800--Sobic001G280400 Sobic004G136500 Sobic004G136500 Sobic004G117800--Sobic004G136500 Sobic001G008800 Sobic001G008800 Sobic004G117800--Sobic001G008800 Sobic004G117800--Sobic001G132900 Sobic004G117800--Sobic002G058700 Sobic004G117800--Sobic003G058900 Sobic003G368800 Sobic003G368800 Sobic001G144600--Sobic003G368800 Sobic006G087400 Sobic006G087400 Sobic001G144600--Sobic006G087400 Sobic001G144600--Sobic001G008800 Sobic001G036300 Sobic001G036300 Sobic001G144600--Sobic001G036300 Sobic001G144600--Sobic003G058900 Sobic001G144600--Sobic010G085200 Sobic001G144600--Sobic009G056300 Sobic001G276200 Sobic001G276200 Sobic001G144600--Sobic001G276200 Sobic002G131300 Sobic002G131300 Sobic001G144600--Sobic002G131300 Sobic004G067400 Sobic004G067400 Sobic001G335500--Sobic004G067400 Sobic006G120800 Sobic006G120800 Sobic001G335500--Sobic006G120800 Sobic003G253400 Sobic003G253400 Sobic001G335500--Sobic003G253400 Sobic007G183300 Sobic007G183300 Sobic001G335500--Sobic007G183300 Sobic009G258400 Sobic009G258400 Sobic001G335500--Sobic009G258400 Sobic004G129600 Sobic004G129600 Sobic001G335500--Sobic004G129600 Sobic002G408600 Sobic002G408600 Sobic001G335500--Sobic002G408600 Sobic010G279900 Sobic010G279900 Sobic001G335500--Sobic010G279900 Sobic005G115500 Sobic005G115500 Sobic001G335500--Sobic005G115500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.