Gene annotation
Transcriptome id Sobic.001G099800.1
Synonym Sb01g008920
Functional annotation nucleic acid binding protein, putative, expressed
UniProt C5WLV7
Pfam PF01918
Panther DB PTHR13516 PTHR13516:SF3
NCBI CDD KOG2567; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G07030 : Alba DNA/RNA-binding protein
RAP-DB (Rice) LOC_Os03g52490.1 : nucleic acid binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a008037 , Zm00025a016864
Brachypodium KQJ82625
Barley HORVU4Hr1G011020.6 , HORVU4Hr1G011020.5 , HORVU4Hr1G011020.3 , HORVU4Hr1G011020.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G099800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
2 Sobic.001G136500 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
3 Sobic.001G132900 expressed protein -
4 Sobic.001G280400 ankyrin repeat domain-containing protein 28, putative, expressed -
5 Sobic.004G206300 pre-mRNA-splicing factor ISY1, putative, expressed K12870: pre-mRNA-splicing factor ISY1
6 Sobic.008G008300 expressed protein -
7 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
8 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
9 Sobic.008G051100 RNA polymerase II subunit A C-terminal domain phosphatase ssu72, putative, expressed K15544: RNA polymerase II subunit A C-terminal domain phosphatase SSU72
10 Sobic.001G389500 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
11 Sobic.004G129600 expressed protein -
12 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
13 Sobic.010G161525 - -
14 Sobic.007G031100 RNA polymerase II complex component SRB7, putative, expressed K15152: MED21, mediator of RNA polymerase II transcription subunit 21
15 Sobic.010G079800 expressed protein -
16 Sobic.001G335500 RNA-binding protein-like, putative, expressed -
17 Sobic.001G008800 expressed protein -
18 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
19 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
20 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2


Gene co-expression network
sample Sobic001G099800 Sobic001G099800 Sobic003G058900 Sobic003G058900 Sobic001G099800--Sobic003G058900 Sobic001G136500 Sobic001G136500 Sobic001G099800--Sobic001G136500 Sobic001G132900 Sobic001G132900 Sobic001G099800--Sobic001G132900 Sobic001G280400 Sobic001G280400 Sobic001G099800--Sobic001G280400 Sobic004G206300 Sobic004G206300 Sobic001G099800--Sobic004G206300 Sobic008G008300 Sobic008G008300 Sobic001G099800--Sobic008G008300 Sobic008G125000 Sobic008G125000 Sobic001G099800--Sobic008G125000 Sobic004G117800 Sobic004G117800 Sobic001G099800--Sobic004G117800 Sobic008G051100 Sobic008G051100 Sobic001G099800--Sobic008G051100 Sobic003G058900--Sobic001G099800 Sobic004G095300 Sobic004G095300 Sobic003G058900--Sobic004G095300 Sobic010G171100 Sobic010G171100 Sobic003G058900--Sobic010G171100 Sobic007G180000 Sobic007G180000 Sobic003G058900--Sobic007G180000 Sobic003G058900--Sobic008G125000 Sobic002G058700 Sobic002G058700 Sobic003G058900--Sobic002G058700 Sobic003G058900--Sobic004G117800 Sobic001G144600 Sobic001G144600 Sobic003G058900--Sobic001G144600 Sobic001G335500 Sobic001G335500 Sobic003G058900--Sobic001G335500 Sobic001G136500--Sobic001G132900 Sobic001G136500--Sobic001G099800 Sobic009G056300 Sobic009G056300 Sobic001G136500--Sobic009G056300 Sobic001G136500--Sobic008G008300 Sobic010G079800 Sobic010G079800 Sobic001G136500--Sobic010G079800 Sobic006G276200 Sobic006G276200 Sobic001G136500--Sobic006G276200 Sobic004G146200 Sobic004G146200 Sobic001G136500--Sobic004G146200 Sobic001G136500--Sobic008G125000 Sobic001G136500--Sobic004G206300 Sobic003G003000 Sobic003G003000 Sobic001G132900--Sobic003G003000 Sobic001G008800 Sobic001G008800 Sobic001G132900--Sobic001G008800 Sobic009G209100 Sobic009G209100 Sobic001G132900--Sobic009G209100 Sobic001G129400 Sobic001G129400 Sobic001G132900--Sobic001G129400 Sobic001G404100 Sobic001G404100 Sobic001G132900--Sobic001G404100 Sobic010G018000 Sobic010G018000 Sobic001G132900--Sobic010G018000 Sobic001G132900--Sobic001G136500 Sobic009G130400 Sobic009G130400 Sobic001G132900--Sobic009G130400 Sobic001G132900--Sobic004G117800 Sobic005G164500 Sobic005G164500 Sobic001G280400--Sobic005G164500 Sobic001G280400--Sobic004G117800 Sobic001G280400--Sobic008G051100 Sobic005G100900 Sobic005G100900 Sobic001G280400--Sobic005G100900 Sobic001G280400--Sobic001G099800 Sobic003G209400 Sobic003G209400 Sobic001G280400--Sobic003G209400 Sobic004G027000 Sobic004G027000 Sobic001G280400--Sobic004G027000 Sobic004G136500 Sobic004G136500 Sobic001G280400--Sobic004G136500 Sobic001G280400--Sobic001G132900 Sobic004G212700 Sobic004G212700 Sobic004G206300--Sobic004G212700 Sobic004G206300--Sobic004G027000 Sobic004G206300--Sobic009G056300 Sobic004G129600 Sobic004G129600 Sobic004G206300--Sobic004G129600 Sobic009G031500 Sobic009G031500 Sobic004G206300--Sobic009G031500 Sobic004G206300--Sobic008G125000 Sobic004G225300 Sobic004G225300 Sobic004G206300--Sobic004G225300 Sobic004G206300--Sobic001G335500 Sobic004G206300--Sobic001G099800 Sobic008G008300--Sobic001G136500 Sobic010G001800 Sobic010G001800 Sobic008G008300--Sobic010G001800 Sobic008G008300--Sobic001G132900 Sobic003G016400 Sobic003G016400 Sobic008G008300--Sobic003G016400 Sobic008G008300--Sobic004G206300 Sobic008G008300--Sobic001G099800 Sobic008G107900 Sobic008G107900 Sobic008G008300--Sobic008G107900 Sobic008G008300--Sobic008G125000 Sobic009G256700 Sobic009G256700 Sobic008G008300--Sobic009G256700 Sobic008G125000--Sobic009G056300 Sobic001G115500 Sobic001G115500 Sobic008G125000--Sobic001G115500 Sobic006G245700 Sobic006G245700 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic004G075200 Sobic004G075200 Sobic008G125000--Sobic004G075200 Sobic009G120500 Sobic009G120500 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic004G358900 Sobic004G358900 Sobic008G125000--Sobic004G358900 Sobic006G170200 Sobic006G170200 Sobic004G117800--Sobic006G170200 Sobic004G117800--Sobic008G051100 Sobic009G029700 Sobic009G029700 Sobic004G117800--Sobic009G029700 Sobic004G117800--Sobic001G280400 Sobic004G117800--Sobic004G136500 Sobic004G117800--Sobic001G008800 Sobic004G117800--Sobic001G132900 Sobic004G117800--Sobic002G058700 Sobic004G117800--Sobic003G058900 Sobic008G051100--Sobic004G117800 Sobic008G103800 Sobic008G103800 Sobic008G051100--Sobic008G103800 Sobic008G051100--Sobic001G280400 Sobic004G184000 Sobic004G184000 Sobic008G051100--Sobic004G184000 Sobic008G051100--Sobic004G206300 Sobic003G167900 Sobic003G167900 Sobic008G051100--Sobic003G167900 Sobic006G020900 Sobic006G020900 Sobic008G051100--Sobic006G020900 Sobic008G051100--Sobic001G099800 Sobic001G408800 Sobic001G408800 Sobic008G051100--Sobic001G408800
Octagon: transcription factors


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