Gene annotation
Transcriptome id Sobic.007G031100.1,Sobic.007G031100.3,Sobic.007G031100.4,Sobic.007G031100.2
Synonym Sb07g002720, MED21
Functional annotation RNA polymerase II complex component SRB7, putative, expressed
UniProt Q8W0T0
Pfam PF11221
Panther DB PTHR13381
NCBI CDD KOG1510; RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7
KEGG Orthology K15152; MED21, mediator of RNA polymerase II transcription subunit 21
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G04780 : mediator 21
RAP-DB (Rice) LOC_Os08g04150.1 : RNA polymerase II complex component SRB7, putative, expressed
MaizeGDB (Corn) Zm00025a030164
Brachypodium KQJ94980
Barley -
Wheat TraesCS7B02G208800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G010200 - -
2 Sobic.001G432100 expressed protein -
3 Sobic.002G280900 la domain containing protein, putative, expressed K18757: la-related protein 1
4 Sobic.003G410200 ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed K04649: HIP2, ubiquitin-conjugating enzyme (huntingtin interacting protein 2)
5 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
6 Sobic.001G188700 OST3/OST6 family protein, putative, expressed K12669: OST3, oligosaccharyltransferase complex subunit gamma
7 Sobic.002G422400 adenylate cyclase family protein, expressed -
8 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
9 Sobic.009G232500 expressed protein -
10 Sobic.010G079800 expressed protein -
11 Sobic.004G229000 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
12 Sobic.004G007700 pentatricopeptide, putative, expressed -
13 Sobic.009G187600 methyltransferase domain containing protein, expressed -
14 Sobic.006G162600 expressed protein -
15 Sobic.003G304800 OsRhmbd4 - Putative Rhomboid homologue, expressed -
16 Sobic.008G107900 glycine-rich protein, putative, expressed -
17 Sobic.010G152600 - -
18 Sobic.006G153200 OsClp7 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
19 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
20 Sobic.006G094500 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -


Gene co-expression network
sample Sobic007G031100 Sobic007G031100 Sobic007G010200 Sobic007G010200 Sobic007G031100--Sobic007G010200 Sobic001G432100 Sobic001G432100 Sobic007G031100--Sobic001G432100 Sobic002G280900 Sobic002G280900 Sobic007G031100--Sobic002G280900 Sobic003G410200 Sobic003G410200 Sobic007G031100--Sobic003G410200 Sobic003G085500 Sobic003G085500 Sobic007G031100--Sobic003G085500 Sobic001G188700 Sobic001G188700 Sobic007G031100--Sobic001G188700 Sobic002G422400 Sobic002G422400 Sobic007G031100--Sobic002G422400 Sobic006G245700 Sobic006G245700 Sobic007G031100--Sobic006G245700 Sobic009G232500 Sobic009G232500 Sobic007G031100--Sobic009G232500 Sobic004G229000 Sobic004G229000 Sobic007G010200--Sobic004G229000 Sobic008G112100 Sobic008G112100 Sobic007G010200--Sobic008G112100 Sobic007G010200--Sobic007G031100 Sobic007G036800 Sobic007G036800 Sobic007G010200--Sobic007G036800 Sobic007G140100 Sobic007G140100 Sobic007G010200--Sobic007G140100 Sobic009G054400 Sobic009G054400 Sobic007G010200--Sobic009G054400 Sobic003G304800 Sobic003G304800 Sobic007G010200--Sobic003G304800 Sobic001G309200 Sobic001G309200 Sobic007G010200--Sobic001G309200 Sobic010G018900 Sobic010G018900 Sobic007G010200--Sobic010G018900 Sobic009G218000 Sobic009G218000 Sobic001G432100--Sobic009G218000 Sobic001G432100--Sobic007G010200 Sobic001G432100--Sobic007G031100 Sobic001G432100--Sobic007G036800 Sobic004G145600 Sobic004G145600 Sobic001G432100--Sobic004G145600 Sobic001G432100--Sobic002G280900 Sobic001G432100--Sobic010G018900 Sobic001G432100--Sobic004G229000 Sobic004G354100 Sobic004G354100 Sobic001G432100--Sobic004G354100 Sobic010G059700 Sobic010G059700 Sobic002G280900--Sobic010G059700 Sobic001G506000 Sobic001G506000 Sobic002G280900--Sobic001G506000 Sobic002G280900--Sobic007G031100 Sobic002G280900--Sobic001G432100 Sobic004G151200 Sobic004G151200 Sobic002G280900--Sobic004G151200 Sobic005G084900 Sobic005G084900 Sobic002G280900--Sobic005G084900 Sobic009G002000 Sobic009G002000 Sobic002G280900--Sobic009G002000 Sobic001G302900 Sobic001G302900 Sobic002G280900--Sobic001G302900 Sobic007G140600 Sobic007G140600 Sobic002G280900--Sobic007G140600 Sobic003G410200--Sobic009G232500 Sobic003G435000 Sobic003G435000 Sobic003G410200--Sobic003G435000 Sobic009G131500 Sobic009G131500 Sobic003G410200--Sobic009G131500 Sobic003G410200--Sobic007G031100 Sobic004G012800 Sobic004G012800 Sobic003G410200--Sobic004G012800 Sobic002G374200 Sobic002G374200 Sobic003G410200--Sobic002G374200 Sobic003G410200--Sobic007G010200 Sobic002G306600 Sobic002G306600 Sobic003G410200--Sobic002G306600 Sobic006G091850 Sobic006G091850 Sobic003G410200--Sobic006G091850 Sobic001G485300 Sobic001G485300 Sobic003G085500--Sobic001G485300 Sobic001G352800 Sobic001G352800 Sobic003G085500--Sobic001G352800 Sobic010G002800 Sobic010G002800 Sobic003G085500--Sobic010G002800 Sobic003G085500--Sobic004G354100 Sobic007G022700 Sobic007G022700 Sobic003G085500--Sobic007G022700 Sobic002G392400 Sobic002G392400 Sobic003G085500--Sobic002G392400 Sobic002G276800 Sobic002G276800 Sobic003G085500--Sobic002G276800 Sobic003G388700 Sobic003G388700 Sobic003G085500--Sobic003G388700 Sobic004G186100 Sobic004G186100 Sobic003G085500--Sobic004G186100 Sobic005G110526 Sobic005G110526 Sobic001G188700--Sobic005G110526 Sobic004G018200 Sobic004G018200 Sobic001G188700--Sobic004G018200 Sobic006G094500 Sobic006G094500 Sobic001G188700--Sobic006G094500 Sobic009G187600 Sobic009G187600 Sobic001G188700--Sobic009G187600 Sobic001G188700--Sobic007G031100 Sobic008G125000 Sobic008G125000 Sobic001G188700--Sobic008G125000 Sobic001G132900 Sobic001G132900 Sobic001G188700--Sobic001G132900 Sobic003G058900 Sobic003G058900 Sobic001G188700--Sobic003G058900 Sobic001G434400 Sobic001G434400 Sobic001G188700--Sobic001G434400 Sobic002G422400--Sobic009G218000 Sobic001G378200 Sobic001G378200 Sobic002G422400--Sobic001G378200 Sobic001G358500 Sobic001G358500 Sobic002G422400--Sobic001G358500 Sobic002G422400--Sobic002G276800 Sobic006G041800 Sobic006G041800 Sobic002G422400--Sobic006G041800 Sobic002G422400--Sobic004G151200 Sobic001G451901 Sobic001G451901 Sobic002G422400--Sobic001G451901 Sobic006G153200 Sobic006G153200 Sobic002G422400--Sobic006G153200 Sobic003G190600 Sobic003G190600 Sobic002G422400--Sobic003G190600 Sobic004G256300 Sobic004G256300 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic001G436300 Sobic001G436300 Sobic006G245700--Sobic001G436300 Sobic003G221500 Sobic003G221500 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic009G232500--Sobic003G410200 Sobic001G107300 Sobic001G107300 Sobic009G232500--Sobic001G107300 Sobic003G109200 Sobic003G109200 Sobic009G232500--Sobic003G109200 Sobic009G232500--Sobic002G374200 Sobic006G181700 Sobic006G181700 Sobic009G232500--Sobic006G181700 Sobic001G478700 Sobic001G478700 Sobic009G232500--Sobic001G478700 Sobic009G232500--Sobic007G010200 Sobic001G239100 Sobic001G239100 Sobic009G232500--Sobic001G239100 Sobic009G232500--Sobic007G031100
Octagon: transcription factors


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