Gene annotation
Transcriptome id Sobic.003G410200.1
Synonym UBC27, Sb03g044480
Functional annotation ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed
UniProt C5XGY6
Pfam PF00627 PF00179
Panther DB PTHR24067 PTHR24067:SF29
NCBI CDD KOG0418; Ubiquitin-protein ligase
KEGG Orthology K04649; HIP2, ubiquitin-conjugating enzyme (huntingtin interacting protein 2)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50870 : ubiquitin-conjugating enzyme 27
RAP-DB (Rice) LOC_Os01g70140.1 : ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed
MaizeGDB (Corn) Zm00025a039252
Brachypodium KQK11302
Barley HORVU3Hr1G095890.1 , HORVU3Hr1G095890.2 , HORVU3Hr1G095890.3 , HORVU3Hr1G095890.4
Wheat TraesCS3D02G432200 , TraesCS3A02G439400 , TraesCS3A02G439400 , TraesCS3B02G473300
Populus -


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cDNA sequences
Sobic.003G410200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G232500 expressed protein -
2 Sobic.003G435000 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
3 Sobic.009G131500 aquaporin protein, putative, expressed K09875: aquaporin SIP
4 Sobic.007G031100 RNA polymerase II complex component SRB7, putative, expressed K15152: MED21, mediator of RNA polymerase II transcription subunit 21
5 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
6 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
7 Sobic.007G010200 - -
8 Sobic.002G306600 proteasome subunit, putative, expressed K12180: COPS7, COP9 signalosome complex subunit 7
9 Sobic.006G091850 - -
10 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
11 Sobic.009G060400 proline-rich family protein, putative, expressed -
12 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
13 Sobic.001G478700 THION26 - Plant thionin family protein precursor, expressed -
14 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
15 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
16 Sobic.003G304800 OsRhmbd4 - Putative Rhomboid homologue, expressed -
17 Sobic.008G107900 glycine-rich protein, putative, expressed -
18 Sobic.005G044100 harpin-induced protein 1 domain containing protein, expressed -
19 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
20 Sobic.002G280900 la domain containing protein, putative, expressed K18757: la-related protein 1


Gene co-expression network
sample Sobic003G410200 Sobic003G410200 Sobic009G232500 Sobic009G232500 Sobic003G410200--Sobic009G232500 Sobic003G435000 Sobic003G435000 Sobic003G410200--Sobic003G435000 Sobic009G131500 Sobic009G131500 Sobic003G410200--Sobic009G131500 Sobic007G031100 Sobic007G031100 Sobic003G410200--Sobic007G031100 Sobic004G012800 Sobic004G012800 Sobic003G410200--Sobic004G012800 Sobic002G374200 Sobic002G374200 Sobic003G410200--Sobic002G374200 Sobic007G010200 Sobic007G010200 Sobic003G410200--Sobic007G010200 Sobic002G306600 Sobic002G306600 Sobic003G410200--Sobic002G306600 Sobic006G091850 Sobic006G091850 Sobic003G410200--Sobic006G091850 Sobic009G232500--Sobic003G410200 Sobic001G107300 Sobic001G107300 Sobic009G232500--Sobic001G107300 Sobic003G109200 Sobic003G109200 Sobic009G232500--Sobic003G109200 Sobic009G232500--Sobic002G374200 Sobic006G181700 Sobic006G181700 Sobic009G232500--Sobic006G181700 Sobic001G478700 Sobic001G478700 Sobic009G232500--Sobic001G478700 Sobic009G232500--Sobic007G010200 Sobic001G239100 Sobic001G239100 Sobic009G232500--Sobic001G239100 Sobic009G232500--Sobic007G031100 Sobic004G242100 Sobic004G242100 Sobic003G435000--Sobic004G242100 Sobic009G016500 Sobic009G016500 Sobic003G435000--Sobic009G016500 Sobic001G370700 Sobic001G370700 Sobic003G435000--Sobic001G370700 Sobic002G308300 Sobic002G308300 Sobic003G435000--Sobic002G308300 Sobic001G347901 Sobic001G347901 Sobic003G435000--Sobic001G347901 Sobic002G180300 Sobic002G180300 Sobic003G435000--Sobic002G180300 Sobic002G260200 Sobic002G260200 Sobic003G435000--Sobic002G260200 Sobic006G231500 Sobic006G231500 Sobic003G435000--Sobic006G231500 Sobic007G013900 Sobic007G013900 Sobic003G435000--Sobic007G013900 Sobic001G532100 Sobic001G532100 Sobic009G131500--Sobic001G532100 Sobic009G131500--Sobic003G410200 Sobic009G108500 Sobic009G108500 Sobic009G131500--Sobic009G108500 Sobic001G472100 Sobic001G472100 Sobic009G131500--Sobic001G472100 Sobic009G060400 Sobic009G060400 Sobic009G131500--Sobic009G060400 Sobic002G280600 Sobic002G280600 Sobic009G131500--Sobic002G280600 Sobic006G049100 Sobic006G049100 Sobic009G131500--Sobic006G049100 Sobic006G051900 Sobic006G051900 Sobic009G131500--Sobic006G051900 Sobic001G036700 Sobic001G036700 Sobic009G131500--Sobic001G036700 Sobic007G031100--Sobic007G010200 Sobic001G432100 Sobic001G432100 Sobic007G031100--Sobic001G432100 Sobic002G280900 Sobic002G280900 Sobic007G031100--Sobic002G280900 Sobic007G031100--Sobic003G410200 Sobic003G085500 Sobic003G085500 Sobic007G031100--Sobic003G085500 Sobic001G188700 Sobic001G188700 Sobic007G031100--Sobic001G188700 Sobic002G422400 Sobic002G422400 Sobic007G031100--Sobic002G422400 Sobic006G245700 Sobic006G245700 Sobic007G031100--Sobic006G245700 Sobic007G031100--Sobic009G232500 Sobic004G137900 Sobic004G137900 Sobic004G012800--Sobic004G137900 Sobic004G012800--Sobic006G231500 Sobic006G231700 Sobic006G231700 Sobic004G012800--Sobic006G231700 Sobic009G001900 Sobic009G001900 Sobic004G012800--Sobic009G001900 Sobic002G254650 Sobic002G254650 Sobic004G012800--Sobic002G254650 Sobic005G111100 Sobic005G111100 Sobic004G012800--Sobic005G111100 Sobic003G358300 Sobic003G358300 Sobic004G012800--Sobic003G358300 Sobic006G094600 Sobic006G094600 Sobic004G012800--Sobic006G094600 Sobic004G012800--Sobic001G532100 Sobic010G212700 Sobic010G212700 Sobic002G374200--Sobic010G212700 Sobic001G500500 Sobic001G500500 Sobic002G374200--Sobic001G500500 Sobic010G237800 Sobic010G237800 Sobic002G374200--Sobic010G237800 Sobic003G007200 Sobic003G007200 Sobic002G374200--Sobic003G007200 Sobic007G153700 Sobic007G153700 Sobic002G374200--Sobic007G153700 Sobic005G160200 Sobic005G160200 Sobic002G374200--Sobic005G160200 Sobic002G374200--Sobic009G232500 Sobic002G374200--Sobic003G410200 Sobic002G196500 Sobic002G196500 Sobic002G374200--Sobic002G196500 Sobic004G229000 Sobic004G229000 Sobic007G010200--Sobic004G229000 Sobic008G112100 Sobic008G112100 Sobic007G010200--Sobic008G112100 Sobic007G010200--Sobic007G031100 Sobic007G036800 Sobic007G036800 Sobic007G010200--Sobic007G036800 Sobic007G140100 Sobic007G140100 Sobic007G010200--Sobic007G140100 Sobic009G054400 Sobic009G054400 Sobic007G010200--Sobic009G054400 Sobic003G304800 Sobic003G304800 Sobic007G010200--Sobic003G304800 Sobic001G309200 Sobic001G309200 Sobic007G010200--Sobic001G309200 Sobic010G018900 Sobic010G018900 Sobic007G010200--Sobic010G018900 Sobic003G004600 Sobic003G004600 Sobic002G306600--Sobic003G004600 Sobic010G059700 Sobic010G059700 Sobic002G306600--Sobic010G059700 Sobic001G458200 Sobic001G458200 Sobic002G306600--Sobic001G458200 Sobic003G128300 Sobic003G128300 Sobic002G306600--Sobic003G128300 Sobic001G157600 Sobic001G157600 Sobic002G306600--Sobic001G157600 Sobic003G221500 Sobic003G221500 Sobic002G306600--Sobic003G221500 Sobic002G267400 Sobic002G267400 Sobic002G306600--Sobic002G267400 Sobic001G487100 Sobic001G487100 Sobic002G306600--Sobic001G487100 Sobic004G088700 Sobic004G088700 Sobic002G306600--Sobic004G088700 Sobic006G170700 Sobic006G170700 Sobic006G091850--Sobic006G170700 Sobic006G091850--Sobic005G160200 Sobic002G315100 Sobic002G315100 Sobic006G091850--Sobic002G315100 Sobic004G207100 Sobic004G207100 Sobic006G091850--Sobic004G207100 Sobic003G415100 Sobic003G415100 Sobic006G091850--Sobic003G415100 Sobic001G154200 Sobic001G154200 Sobic006G091850--Sobic001G154200 Sobic001G425200 Sobic001G425200 Sobic006G091850--Sobic001G425200 Sobic006G184200 Sobic006G184200 Sobic006G091850--Sobic006G184200 Sobic006G091850--Sobic009G060400
Octagon: transcription factors


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