Gene annotation
Transcriptome id Sobic.003G435000.1
Synonym Sb03g046590, TXR1
Functional annotation mitochondrial import inner membrane translocase subunit Tim16, putative, expressed
UniProt C5XIM0
Pfam PF03656
Panther DB PTHR12388 PTHR12388:SF2
NCBI CDD KOG3442; Uncharacterized conserved protein
KEGG Orthology K17805; PAM16, mitochondrial import inner membrane translocase subunit TIM16
Gene Ontology GO:0005744; TIM23 mitochondrial import inner membrane translocase complex


Orthologs (automatic annotation)
TAIR AT3G59280 : Protein Transporter, Pam16
RAP-DB (Rice) LOC_Os10g33910.1 : mitochondrial import inner membrane translocase subunit Tim16, putative, expressed
MaizeGDB (Corn) Zm00025a026326
Brachypodium -
Barley HORVU3Hr1G047670.1 , HORVU3Hr1G104230.1 , HORVU3Hr1G104230.3 , HORVU3Hr1G104230.2 , HORVU3Hr1G104230.5 , HORVU3Hr1G104230.4 , HORVU3Hr1G104230.6
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G242100 expressed protein -
2 Sobic.009G016500 expressed protein -
3 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
4 Sobic.002G308300 expressed protein -
5 Sobic.001G347901 - -
6 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
7 Sobic.002G260200 - -
8 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
9 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
10 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
11 Sobic.009G115700 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
12 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
13 Sobic.008G186600 ergosterol biosynthetic protein 28, putative, expressed -
14 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
15 Sobic.003G410200 ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed K04649: HIP2, ubiquitin-conjugating enzyme (huntingtin interacting protein 2)
16 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
17 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
18 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
19 Sobic.009G224700 anti-silencing protein, ASF1-like domain containing protein, expressed K10753: histone chaperone ASF1
20 Sobic.003G261100 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein


Gene co-expression network
sample Sobic003G435000 Sobic003G435000 Sobic004G242100 Sobic004G242100 Sobic003G435000--Sobic004G242100 Sobic009G016500 Sobic009G016500 Sobic003G435000--Sobic009G016500 Sobic001G370700 Sobic001G370700 Sobic003G435000--Sobic001G370700 Sobic002G308300 Sobic002G308300 Sobic003G435000--Sobic002G308300 Sobic001G347901 Sobic001G347901 Sobic003G435000--Sobic001G347901 Sobic002G180300 Sobic002G180300 Sobic003G435000--Sobic002G180300 Sobic002G260200 Sobic002G260200 Sobic003G435000--Sobic002G260200 Sobic006G231500 Sobic006G231500 Sobic003G435000--Sobic006G231500 Sobic007G013900 Sobic007G013900 Sobic003G435000--Sobic007G013900 Sobic001G402600 Sobic001G402600 Sobic004G242100--Sobic001G402600 Sobic003G031200 Sobic003G031200 Sobic004G242100--Sobic003G031200 Sobic004G242100--Sobic003G435000 Sobic001G544100 Sobic001G544100 Sobic004G242100--Sobic001G544100 Sobic006G236500 Sobic006G236500 Sobic004G242100--Sobic006G236500 Sobic004G242100--Sobic009G016500 Sobic004G012800 Sobic004G012800 Sobic004G242100--Sobic004G012800 Sobic007G037000 Sobic007G037000 Sobic004G242100--Sobic007G037000 Sobic001G434400 Sobic001G434400 Sobic004G242100--Sobic001G434400 Sobic009G016500--Sobic001G347901 Sobic009G016500--Sobic002G308300 Sobic001G286200 Sobic001G286200 Sobic009G016500--Sobic001G286200 Sobic001G473400 Sobic001G473400 Sobic009G016500--Sobic001G473400 Sobic009G016500--Sobic001G370700 Sobic010G264300 Sobic010G264300 Sobic009G016500--Sobic010G264300 Sobic010G258000 Sobic010G258000 Sobic009G016500--Sobic010G258000 Sobic002G078300 Sobic002G078300 Sobic009G016500--Sobic002G078300 Sobic008G136800 Sobic008G136800 Sobic009G016500--Sobic008G136800 Sobic001G370700--Sobic010G264300 Sobic002G309700 Sobic002G309700 Sobic001G370700--Sobic002G309700 Sobic001G370700--Sobic002G308300 Sobic001G370700--Sobic002G180300 Sobic001G370700--Sobic002G078300 Sobic001G370700--Sobic001G347901 Sobic003G261100 Sobic003G261100 Sobic001G370700--Sobic003G261100 Sobic009G179100 Sobic009G179100 Sobic001G370700--Sobic009G179100 Sobic004G260200 Sobic004G260200 Sobic001G370700--Sobic004G260200 Sobic002G308300--Sobic001G286200 Sobic002G308300--Sobic010G264300 Sobic002G308300--Sobic001G347901 Sobic002G308300--Sobic009G016500 Sobic002G308300--Sobic002G309700 Sobic001G282500 Sobic001G282500 Sobic002G308300--Sobic001G282500 Sobic002G308300--Sobic001G370700 Sobic002G308300--Sobic002G180300 Sobic002G308300--Sobic002G078300 Sobic004G342400 Sobic004G342400 Sobic001G347901--Sobic004G342400 Sobic001G347901--Sobic002G308300 Sobic001G347901--Sobic009G016500 Sobic001G347901--Sobic009G179100 Sobic001G347901--Sobic001G370700 Sobic009G233400 Sobic009G233400 Sobic001G347901--Sobic009G233400 Sobic002G415500 Sobic002G415500 Sobic001G347901--Sobic002G415500 Sobic009G173500 Sobic009G173500 Sobic001G347901--Sobic009G173500 Sobic001G334300 Sobic001G334300 Sobic001G347901--Sobic001G334300 Sobic002G180300--Sobic002G309700 Sobic006G013000 Sobic006G013000 Sobic002G180300--Sobic006G013000 Sobic002G356400 Sobic002G356400 Sobic002G180300--Sobic002G356400 Sobic002G180300--Sobic009G179100 Sobic009G115700 Sobic009G115700 Sobic002G180300--Sobic009G115700 Sobic002G180300--Sobic010G264300 Sobic001G404800 Sobic001G404800 Sobic002G180300--Sobic001G404800 Sobic002G180300--Sobic001G370700 Sobic002G180300--Sobic002G308300 Sobic002G260200--Sobic007G013900 Sobic002G260200--Sobic006G013000 Sobic001G031800 Sobic001G031800 Sobic002G260200--Sobic001G031800 Sobic004G159000 Sobic004G159000 Sobic002G260200--Sobic004G159000 Sobic002G296200 Sobic002G296200 Sobic002G260200--Sobic002G296200 Sobic002G262200 Sobic002G262200 Sobic002G260200--Sobic002G262200 Sobic003G305100 Sobic003G305100 Sobic002G260200--Sobic003G305100 Sobic009G001900 Sobic009G001900 Sobic002G260200--Sobic009G001900 Sobic002G260200--Sobic004G260200 Sobic006G231500--Sobic003G305100 Sobic009G212300 Sobic009G212300 Sobic006G231500--Sobic009G212300 Sobic006G231500--Sobic009G001900 Sobic004G202100 Sobic004G202100 Sobic006G231500--Sobic004G202100 Sobic006G231500--Sobic004G012800 Sobic006G109700 Sobic006G109700 Sobic006G231500--Sobic006G109700 Sobic007G091000 Sobic007G091000 Sobic006G231500--Sobic007G091000 Sobic006G231500--Sobic002G296200 Sobic001G286300 Sobic001G286300 Sobic006G231500--Sobic001G286300 Sobic009G215300 Sobic009G215300 Sobic007G013900--Sobic009G215300 Sobic007G013900--Sobic004G159000 Sobic007G013900--Sobic002G260200 Sobic007G013900--Sobic006G013000 Sobic007G013900--Sobic002G309700 Sobic007G013900--Sobic001G031800 Sobic007G013900--Sobic004G260200 Sobic002G395000 Sobic002G395000 Sobic007G013900--Sobic002G395000 Sobic007G013900--Sobic008G136800
Octagon: transcription factors


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