Gene annotation
Transcriptome id Sobic.009G224700.1
Synonym Sb09g027820, SGA01, SGA1, ASF1B
Functional annotation anti-silencing protein, ASF1-like domain containing protein, expressed
UniProt C5YVC7
Pfam PF04729
Panther DB PTHR12040 PTHR12040:SF4
NCBI CDD KOG3265; Histone chaperone involved in gene silencing
KEGG Orthology K10753; histone chaperone ASF1
Gene Ontology GO:0006333; chromatin assembly or disassembly GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G38110 : anti- silencing function 1b
RAP-DB (Rice) LOC_Os05g48030.1 : anti-silencing protein, ASF1-like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036544 , Zm00025a044486
Brachypodium PNT70758 , KQK05000 , KQK09221
Barley HORVU3Hr1G063450.5 , HORVU3Hr1G063450.4 , HORVU3Hr1G063450.6 , HORVU3Hr1G063450.1 , HORVU3Hr1G063450.3 , HORVU3Hr1G063450.2 , HORVU1Hr1G084120.1 , HORVU1Hr1G084120.5
Wheat TraesCS3A02G265000 , TraesCS3D02G265200 , TraesCS1A02G380700 , TraesCS3B02G298600 , TraesCS1B02G403000 , TraesCS1D02G388000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G286300 - -
2 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
3 Sobic.002G222900 transmembrane protein 50A, putative, expressed -
4 Sobic.002G308300 expressed protein -
5 Sobic.001G347901 - -
6 Sobic.009G016500 expressed protein -
7 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
8 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
9 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
10 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
11 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
12 Sobic.001G181500 expressed protein -
13 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
14 Sobic.007G134000 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
15 Sobic.002G296200 expressed protein -
16 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
17 Sobic.003G296800 expressed protein -
18 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
19 Sobic.003G435000 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
20 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30


Gene co-expression network
sample Sobic009G224700 Sobic009G224700 Sobic001G286300 Sobic001G286300 Sobic009G224700--Sobic001G286300 Sobic009G120100 Sobic009G120100 Sobic009G224700--Sobic009G120100 Sobic002G222900 Sobic002G222900 Sobic009G224700--Sobic002G222900 Sobic002G308300 Sobic002G308300 Sobic009G224700--Sobic002G308300 Sobic001G347901 Sobic001G347901 Sobic009G224700--Sobic001G347901 Sobic009G016500 Sobic009G016500 Sobic009G224700--Sobic009G016500 Sobic002G309700 Sobic002G309700 Sobic009G224700--Sobic002G309700 Sobic002G331300 Sobic002G331300 Sobic009G224700--Sobic002G331300 Sobic001G128400 Sobic001G128400 Sobic009G224700--Sobic001G128400 Sobic002G296200 Sobic002G296200 Sobic001G286300--Sobic002G296200 Sobic008G094600 Sobic008G094600 Sobic001G286300--Sobic008G094600 Sobic006G013000 Sobic006G013000 Sobic001G286300--Sobic006G013000 Sobic001G286300--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic001G286300--Sobic003G129800 Sobic001G286300--Sobic002G309700 Sobic009G001900 Sobic009G001900 Sobic001G286300--Sobic009G001900 Sobic003G296800 Sobic003G296800 Sobic001G286300--Sobic003G296800 Sobic007G161700 Sobic007G161700 Sobic001G286300--Sobic007G161700 Sobic004G063500 Sobic004G063500 Sobic009G120100--Sobic004G063500 Sobic007G152400 Sobic007G152400 Sobic009G120100--Sobic007G152400 Sobic009G120100--Sobic001G286300 Sobic006G095200 Sobic006G095200 Sobic009G120100--Sobic006G095200 Sobic009G120100--Sobic002G331300 Sobic009G070200 Sobic009G070200 Sobic009G120100--Sobic009G070200 Sobic003G233500 Sobic003G233500 Sobic009G120100--Sobic003G233500 Sobic005G111100 Sobic005G111100 Sobic009G120100--Sobic005G111100 Sobic007G029400 Sobic007G029400 Sobic009G120100--Sobic007G029400 Sobic003G155400 Sobic003G155400 Sobic002G222900--Sobic003G155400 Sobic001G224400 Sobic001G224400 Sobic002G222900--Sobic001G224400 Sobic007G134000 Sobic007G134000 Sobic002G222900--Sobic007G134000 Sobic010G154700 Sobic010G154700 Sobic002G222900--Sobic010G154700 Sobic007G068000 Sobic007G068000 Sobic002G222900--Sobic007G068000 Sobic010G225300 Sobic010G225300 Sobic002G222900--Sobic010G225300 Sobic001G459200 Sobic001G459200 Sobic002G222900--Sobic001G459200 Sobic002G222900--Sobic001G128400 Sobic007G051000 Sobic007G051000 Sobic002G222900--Sobic007G051000 Sobic001G286200 Sobic001G286200 Sobic002G308300--Sobic001G286200 Sobic010G264300 Sobic010G264300 Sobic002G308300--Sobic010G264300 Sobic002G308300--Sobic001G347901 Sobic002G308300--Sobic009G016500 Sobic002G308300--Sobic002G309700 Sobic001G282500 Sobic001G282500 Sobic002G308300--Sobic001G282500 Sobic001G370700 Sobic001G370700 Sobic002G308300--Sobic001G370700 Sobic002G180300 Sobic002G180300 Sobic002G308300--Sobic002G180300 Sobic002G078300 Sobic002G078300 Sobic002G308300--Sobic002G078300 Sobic004G342400 Sobic004G342400 Sobic001G347901--Sobic004G342400 Sobic001G347901--Sobic002G308300 Sobic001G347901--Sobic009G016500 Sobic009G179100 Sobic009G179100 Sobic001G347901--Sobic009G179100 Sobic001G347901--Sobic001G370700 Sobic009G233400 Sobic009G233400 Sobic001G347901--Sobic009G233400 Sobic002G415500 Sobic002G415500 Sobic001G347901--Sobic002G415500 Sobic009G173500 Sobic009G173500 Sobic001G347901--Sobic009G173500 Sobic001G334300 Sobic001G334300 Sobic001G347901--Sobic001G334300 Sobic009G016500--Sobic001G347901 Sobic009G016500--Sobic002G308300 Sobic009G016500--Sobic001G286200 Sobic001G473400 Sobic001G473400 Sobic009G016500--Sobic001G473400 Sobic009G016500--Sobic001G370700 Sobic009G016500--Sobic010G264300 Sobic010G258000 Sobic010G258000 Sobic009G016500--Sobic010G258000 Sobic009G016500--Sobic002G078300 Sobic008G136800 Sobic008G136800 Sobic009G016500--Sobic008G136800 Sobic004G260200 Sobic004G260200 Sobic002G309700--Sobic004G260200 Sobic001G047800 Sobic001G047800 Sobic002G309700--Sobic001G047800 Sobic002G356400 Sobic002G356400 Sobic002G309700--Sobic002G356400 Sobic009G215300 Sobic009G215300 Sobic002G309700--Sobic009G215300 Sobic001G404800 Sobic001G404800 Sobic002G309700--Sobic001G404800 Sobic001G074700 Sobic001G074700 Sobic002G309700--Sobic001G074700 Sobic002G309700--Sobic002G296200 Sobic001G465800 Sobic001G465800 Sobic002G309700--Sobic001G465800 Sobic003G215700 Sobic003G215700 Sobic002G309700--Sobic003G215700 Sobic006G115000 Sobic006G115000 Sobic002G331300--Sobic006G115000 Sobic005G050500 Sobic005G050500 Sobic002G331300--Sobic005G050500 Sobic002G331300--Sobic003G129800 Sobic002G331300--Sobic009G179100 Sobic002G331300--Sobic004G342400 Sobic002G331300--Sobic001G334300 Sobic002G331300--Sobic009G233400 Sobic009G227400 Sobic009G227400 Sobic002G331300--Sobic009G227400 Sobic010G023900 Sobic010G023900 Sobic002G331300--Sobic010G023900 Sobic001G128400--Sobic005G111100 Sobic001G128400--Sobic003G129800 Sobic010G204500 Sobic010G204500 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic010G054200 Sobic010G054200 Sobic001G128400--Sobic010G054200 Sobic003G280700 Sobic003G280700 Sobic001G128400--Sobic003G280700 Sobic003G109600 Sobic003G109600 Sobic001G128400--Sobic003G109600
Octagon: transcription factors


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