Gene annotation
Transcriptome id Sobic.007G192100.1
Synonym Sb07g026110
Functional annotation emp24/gp25L/p24 family protein, putative, expressed
UniProt C5YHR6
Pfam PF01105
Panther DB PTHR22811 PTHR22811:SF50
NCBI CDD KOG1692; Putative cargo transport protein EMP24 (p24 protein family)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT3G07680 : emp24/gp25L/p24 family/GOLD family protein
RAP-DB (Rice) LOC_Os08g42050.1 : emp24/gp25L/p24 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a005279 , Zm00025a030416
Brachypodium KQJ99141
Barley HORVU7Hr1G054550.1
Wheat TraesCS7A02G261800 , TraesCS7B02G159500 , TraesCS7D02G262600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G192100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G108500 histone deacetylase 6, putative, expressed -
2 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
3 Sobic.001G402600 expressed protein -
4 Sobic.002G176400 ubiquitin domain-containing protein 2, putative, expressed -
5 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
6 Sobic.007G038800 expressed protein -
7 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
8 Sobic.002G399500 SNARE associated Golgi protein, putative, expressed -
9 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
10 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
11 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
12 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
13 Sobic.004G164000 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
14 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
15 Sobic.004G296700 ethylene-responsive element-binding protein, putative, expressed -
16 Sobic.010G185100 RNA polymerase Rpc34 subunit family protein, expressed K03025: RPC6, DNA-directed RNA polymerase III subunit RPC6
17 Sobic.006G143500 expressed protein -
18 Sobic.004G122000 protein of unknown function DUF502 domain containing protein, expressed -
19 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
20 Sobic.001G285300 expressed protein -


Gene co-expression network
sample Sobic007G192100 Sobic007G192100 Sobic008G108500 Sobic008G108500 Sobic007G192100--Sobic008G108500 Sobic001G036700 Sobic001G036700 Sobic007G192100--Sobic001G036700 Sobic001G402600 Sobic001G402600 Sobic007G192100--Sobic001G402600 Sobic002G176400 Sobic002G176400 Sobic007G192100--Sobic002G176400 Sobic001G126200 Sobic001G126200 Sobic007G192100--Sobic001G126200 Sobic007G038800 Sobic007G038800 Sobic007G192100--Sobic007G038800 Sobic001G392800 Sobic001G392800 Sobic007G192100--Sobic001G392800 Sobic002G399500 Sobic002G399500 Sobic007G192100--Sobic002G399500 Sobic007G117800 Sobic007G117800 Sobic007G192100--Sobic007G117800 Sobic008G108500--Sobic007G192100 Sobic008G108500--Sobic002G176400 Sobic003G189900 Sobic003G189900 Sobic008G108500--Sobic003G189900 Sobic002G401700 Sobic002G401700 Sobic008G108500--Sobic002G401700 Sobic008G108500--Sobic001G036700 Sobic008G108500--Sobic007G038800 Sobic004G122000 Sobic004G122000 Sobic008G108500--Sobic004G122000 Sobic008G108500--Sobic007G117800 Sobic009G086200 Sobic009G086200 Sobic008G108500--Sobic009G086200 Sobic001G532100 Sobic001G532100 Sobic001G036700--Sobic001G532100 Sobic001G036700--Sobic002G176400 Sobic001G036700--Sobic007G192100 Sobic001G285300 Sobic001G285300 Sobic001G036700--Sobic001G285300 Sobic006G094600 Sobic006G094600 Sobic001G036700--Sobic006G094600 Sobic001G036700--Sobic001G126200 Sobic003G131300 Sobic003G131300 Sobic001G036700--Sobic003G131300 Sobic003G420700 Sobic003G420700 Sobic001G036700--Sobic003G420700 Sobic001G036700--Sobic009G086200 Sobic004G242100 Sobic004G242100 Sobic001G402600--Sobic004G242100 Sobic001G402600--Sobic007G192100 Sobic001G402600--Sobic001G126200 Sobic007G092100 Sobic007G092100 Sobic001G402600--Sobic007G092100 Sobic003G358300 Sobic003G358300 Sobic001G402600--Sobic003G358300 Sobic006G143500 Sobic006G143500 Sobic001G402600--Sobic006G143500 Sobic001G402600--Sobic001G285300 Sobic003G224300 Sobic003G224300 Sobic001G402600--Sobic003G224300 Sobic007G073600 Sobic007G073600 Sobic001G402600--Sobic007G073600 Sobic002G176400--Sobic001G036700 Sobic002G176400--Sobic008G108500 Sobic002G176400--Sobic004G122000 Sobic002G176400--Sobic007G192100 Sobic002G176400--Sobic003G189900 Sobic002G176400--Sobic009G086200 Sobic002G176400--Sobic001G126200 Sobic009G034400 Sobic009G034400 Sobic002G176400--Sobic009G034400 Sobic002G176400--Sobic007G038800 Sobic006G222400 Sobic006G222400 Sobic001G126200--Sobic006G222400 Sobic004G224800 Sobic004G224800 Sobic001G126200--Sobic004G224800 Sobic001G126200--Sobic006G094600 Sobic001G126200--Sobic003G131300 Sobic001G126200--Sobic001G285300 Sobic010G238700 Sobic010G238700 Sobic001G126200--Sobic010G238700 Sobic001G367000 Sobic001G367000 Sobic001G126200--Sobic001G367000 Sobic002G044000 Sobic002G044000 Sobic001G126200--Sobic002G044000 Sobic001G126200--Sobic007G192100 Sobic009G036900 Sobic009G036900 Sobic007G038800--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic007G038800--Sobic002G068300 Sobic007G038800--Sobic003G189900 Sobic007G038800--Sobic007G192100 Sobic007G038800--Sobic009G034400 Sobic006G099800 Sobic006G099800 Sobic007G038800--Sobic006G099800 Sobic009G252800 Sobic009G252800 Sobic007G038800--Sobic009G252800 Sobic007G038800--Sobic008G108500 Sobic007G038800--Sobic001G126200 Sobic002G262200 Sobic002G262200 Sobic001G392800--Sobic002G262200 Sobic003G217100 Sobic003G217100 Sobic001G392800--Sobic003G217100 Sobic002G090700 Sobic002G090700 Sobic001G392800--Sobic002G090700 Sobic001G035400 Sobic001G035400 Sobic001G392800--Sobic001G035400 Sobic004G159000 Sobic004G159000 Sobic001G392800--Sobic004G159000 Sobic004G344800 Sobic004G344800 Sobic001G392800--Sobic004G344800 Sobic009G001900 Sobic009G001900 Sobic001G392800--Sobic009G001900 Sobic009G112900 Sobic009G112900 Sobic001G392800--Sobic009G112900 Sobic004G066800 Sobic004G066800 Sobic001G392800--Sobic004G066800 Sobic002G399500--Sobic007G192100 Sobic001G061200 Sobic001G061200 Sobic002G399500--Sobic001G061200 Sobic002G029300 Sobic002G029300 Sobic002G399500--Sobic002G029300 Sobic003G148900 Sobic003G148900 Sobic002G399500--Sobic003G148900 Sobic002G040700 Sobic002G040700 Sobic002G399500--Sobic002G040700 Sobic001G122000 Sobic001G122000 Sobic002G399500--Sobic001G122000 Sobic003G382900 Sobic003G382900 Sobic002G399500--Sobic003G382900 Sobic002G399500--Sobic001G036700 Sobic002G399500--Sobic002G401700 Sobic007G117800--Sobic003G148900 Sobic001G443200 Sobic001G443200 Sobic007G117800--Sobic001G443200 Sobic007G117800--Sobic002G401700 Sobic003G276100 Sobic003G276100 Sobic007G117800--Sobic003G276100 Sobic007G012900 Sobic007G012900 Sobic007G117800--Sobic007G012900 Sobic005G184200 Sobic005G184200 Sobic007G117800--Sobic005G184200 Sobic007G117800--Sobic004G159000 Sobic003G200600 Sobic003G200600 Sobic007G117800--Sobic003G200600 Sobic007G117800--Sobic002G262200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.