Gene annotation
Transcriptome id Sobic.008G108500.2,Sobic.008G108500.3
Synonym Sb08g016307
Functional annotation histone deacetylase 6, putative, expressed
UniProt A0A1Z5R5Z7
Pfam PF02148
Panther DB PTHR10625
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G14830 : Regulator of Vps4 activity in the MVB pathway protein
RAP-DB (Rice) LOC_Os12g32374.1 : histone deacetylase 6, putative, expressed
MaizeGDB (Corn) Zm00025a025578 , Zm00025a040655
Brachypodium PNT62664 , PNT62665 , KQJ86606 , KQJ86605
Barley -
Wheat TraesCS5A02G105700 , TraesCS5B02G107800 , TraesCS5D02G115400 , TraesCS5D02G115400
Populus -


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cDNA sequences
Sobic.008G108500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
2 Sobic.002G176400 ubiquitin domain-containing protein 2, putative, expressed -
3 Sobic.003G189900 expressed protein -
4 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
5 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
6 Sobic.007G038800 expressed protein -
7 Sobic.004G122000 protein of unknown function DUF502 domain containing protein, expressed -
8 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
9 Sobic.009G086200 ubiquitin-conjugating enzyme E2 O, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
10 Sobic.006G099800 signal recognition particle 19 kDa protein, putative, expressed K03105: signal recognition particle subunit SRP19
11 Sobic.005G049000 transcription elongation factor protein, putative, expressed -
12 Sobic.004G048700 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
13 Sobic.004G116600 E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
14 Sobic.004G296700 ethylene-responsive element-binding protein, putative, expressed -
15 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
16 Sobic.008G111800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
17 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
18 Sobic.009G059400 expressed protein -
19 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
20 Sobic.007G201000 methyltransferase domain containing protein, expressed -


Gene co-expression network
sample Sobic008G108500 Sobic008G108500 Sobic007G192100 Sobic007G192100 Sobic008G108500--Sobic007G192100 Sobic002G176400 Sobic002G176400 Sobic008G108500--Sobic002G176400 Sobic003G189900 Sobic003G189900 Sobic008G108500--Sobic003G189900 Sobic002G401700 Sobic002G401700 Sobic008G108500--Sobic002G401700 Sobic001G036700 Sobic001G036700 Sobic008G108500--Sobic001G036700 Sobic007G038800 Sobic007G038800 Sobic008G108500--Sobic007G038800 Sobic004G122000 Sobic004G122000 Sobic008G108500--Sobic004G122000 Sobic007G117800 Sobic007G117800 Sobic008G108500--Sobic007G117800 Sobic009G086200 Sobic009G086200 Sobic008G108500--Sobic009G086200 Sobic007G192100--Sobic008G108500 Sobic007G192100--Sobic001G036700 Sobic001G402600 Sobic001G402600 Sobic007G192100--Sobic001G402600 Sobic007G192100--Sobic002G176400 Sobic001G126200 Sobic001G126200 Sobic007G192100--Sobic001G126200 Sobic007G192100--Sobic007G038800 Sobic001G392800 Sobic001G392800 Sobic007G192100--Sobic001G392800 Sobic002G399500 Sobic002G399500 Sobic007G192100--Sobic002G399500 Sobic007G192100--Sobic007G117800 Sobic002G176400--Sobic001G036700 Sobic002G176400--Sobic008G108500 Sobic002G176400--Sobic004G122000 Sobic002G176400--Sobic007G192100 Sobic002G176400--Sobic003G189900 Sobic002G176400--Sobic009G086200 Sobic002G176400--Sobic001G126200 Sobic009G034400 Sobic009G034400 Sobic002G176400--Sobic009G034400 Sobic002G176400--Sobic007G038800 Sobic001G390500 Sobic001G390500 Sobic003G189900--Sobic001G390500 Sobic001G309100 Sobic001G309100 Sobic003G189900--Sobic001G309100 Sobic003G189900--Sobic008G108500 Sobic003G189900--Sobic007G038800 Sobic003G189900--Sobic002G176400 Sobic003G311000 Sobic003G311000 Sobic003G189900--Sobic003G311000 Sobic001G083600 Sobic001G083600 Sobic003G189900--Sobic001G083600 Sobic006G002500 Sobic006G002500 Sobic003G189900--Sobic006G002500 Sobic010G071200 Sobic010G071200 Sobic003G189900--Sobic010G071200 Sobic010G007400 Sobic010G007400 Sobic002G401700--Sobic010G007400 Sobic007G012900 Sobic007G012900 Sobic002G401700--Sobic007G012900 Sobic004G159000 Sobic004G159000 Sobic002G401700--Sobic004G159000 Sobic002G401700--Sobic007G117800 Sobic001G050400 Sobic001G050400 Sobic002G401700--Sobic001G050400 Sobic003G116600 Sobic003G116600 Sobic002G401700--Sobic003G116600 Sobic002G401700--Sobic008G108500 Sobic002G276800 Sobic002G276800 Sobic002G401700--Sobic002G276800 Sobic001G378200 Sobic001G378200 Sobic002G401700--Sobic001G378200 Sobic001G532100 Sobic001G532100 Sobic001G036700--Sobic001G532100 Sobic001G036700--Sobic002G176400 Sobic001G036700--Sobic007G192100 Sobic001G285300 Sobic001G285300 Sobic001G036700--Sobic001G285300 Sobic006G094600 Sobic006G094600 Sobic001G036700--Sobic006G094600 Sobic001G036700--Sobic001G126200 Sobic003G131300 Sobic003G131300 Sobic001G036700--Sobic003G131300 Sobic003G420700 Sobic003G420700 Sobic001G036700--Sobic003G420700 Sobic001G036700--Sobic009G086200 Sobic009G036900 Sobic009G036900 Sobic007G038800--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic007G038800--Sobic002G068300 Sobic007G038800--Sobic003G189900 Sobic007G038800--Sobic007G192100 Sobic007G038800--Sobic009G034400 Sobic006G099800 Sobic006G099800 Sobic007G038800--Sobic006G099800 Sobic009G252800 Sobic009G252800 Sobic007G038800--Sobic009G252800 Sobic007G038800--Sobic008G108500 Sobic007G038800--Sobic001G126200 Sobic004G122000--Sobic009G034400 Sobic004G048700 Sobic004G048700 Sobic004G122000--Sobic004G048700 Sobic004G122000--Sobic009G036900 Sobic004G122000--Sobic002G176400 Sobic003G416600 Sobic003G416600 Sobic004G122000--Sobic003G416600 Sobic004G122000--Sobic001G036700 Sobic004G122000--Sobic008G108500 Sobic004G122000--Sobic007G192100 Sobic004G122000--Sobic001G285300 Sobic003G148900 Sobic003G148900 Sobic007G117800--Sobic003G148900 Sobic001G443200 Sobic001G443200 Sobic007G117800--Sobic001G443200 Sobic007G117800--Sobic002G401700 Sobic003G276100 Sobic003G276100 Sobic007G117800--Sobic003G276100 Sobic007G117800--Sobic007G012900 Sobic005G184200 Sobic005G184200 Sobic007G117800--Sobic005G184200 Sobic007G117800--Sobic004G159000 Sobic003G200600 Sobic003G200600 Sobic007G117800--Sobic003G200600 Sobic002G262200 Sobic002G262200 Sobic007G117800--Sobic002G262200 Sobic009G086200--Sobic002G176400 Sobic009G086200--Sobic001G036700 Sobic009G086200--Sobic001G285300 Sobic009G086200--Sobic001G532100 Sobic003G043400 Sobic003G043400 Sobic009G086200--Sobic003G043400 Sobic009G086200--Sobic007G192100 Sobic009G086200--Sobic004G048700 Sobic009G086200--Sobic007G038800 Sobic009G086200--Sobic008G108500
Octagon: transcription factors


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