Gene annotation
Transcriptome id Sobic.005G049000.1
Synonym Sb05g004000
Functional annotation transcription elongation factor protein, putative, expressed
UniProt C5Y586
Pfam PF08711
Panther DB PTHR15141
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0005634nucleus GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G09850 : Transcription elongation factor (TFIIS) family protein
RAP-DB (Rice) LOC_Os12g06850.1 : transcription elongation factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a034185
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G049000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G116600 E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
2 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
3 Sobic.008G108500 histone deacetylase 6, putative, expressed -
4 Sobic.010G069500 zinc ion binding protein, putative, expressed -
5 Sobic.008G006000 expressed protein -
6 Sobic.007G177500 thaumatin, putative, expressed -
7 Sobic.005G170000 expressed protein -
8 Sobic.006G203600 EF hand family protein, putative, expressed -
9 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.007G158900 expressed protein -
11 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
12 Sobic.009G059400 expressed protein -
13 Sobic.009G125000 cyclin-dependent kinase C-1, putative, expressed K08819: cyclin-dependent kinase 12/13
14 Sobic.008G111800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
15 Sobic.001G188000 SAM-dependent methyltransferase, putative, expressed -
16 Sobic.004G313300 expressed protein -
17 Sobic.004G141400 START domain containing protein, putative, expressed -
18 Sobic.004G296700 ethylene-responsive element-binding protein, putative, expressed -
19 Sobic.001G306800 expressed protein -
20 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -


Gene co-expression network
sample Sobic005G049000 Sobic005G049000 Sobic004G116600 Sobic004G116600 Sobic005G049000--Sobic004G116600 Sobic007G192400 Sobic007G192400 Sobic005G049000--Sobic007G192400 Sobic008G108500 Sobic008G108500 Sobic005G049000--Sobic008G108500 Sobic010G069500 Sobic010G069500 Sobic005G049000--Sobic010G069500 Sobic008G006000 Sobic008G006000 Sobic005G049000--Sobic008G006000 Sobic007G177500 Sobic007G177500 Sobic005G049000--Sobic007G177500 Sobic005G170000 Sobic005G170000 Sobic005G049000--Sobic005G170000 Sobic006G203600 Sobic006G203600 Sobic005G049000--Sobic006G203600 Sobic006G144000 Sobic006G144000 Sobic005G049000--Sobic006G144000 Sobic001G202266 Sobic001G202266 Sobic004G116600--Sobic001G202266 Sobic001G287800 Sobic001G287800 Sobic004G116600--Sobic001G287800 Sobic004G180900 Sobic004G180900 Sobic004G116600--Sobic004G180900 Sobic006G130200 Sobic006G130200 Sobic004G116600--Sobic006G130200 Sobic004G116600--Sobic005G049000 Sobic004G116600--Sobic006G144000 Sobic004G218300 Sobic004G218300 Sobic004G116600--Sobic004G218300 Sobic001G017200 Sobic001G017200 Sobic004G116600--Sobic001G017200 Sobic004G116600--Sobic007G192400 Sobic003G353700 Sobic003G353700 Sobic007G192400--Sobic003G353700 Sobic007G192400--Sobic008G006000 Sobic007G077532 Sobic007G077532 Sobic007G192400--Sobic007G077532 Sobic010G181600 Sobic010G181600 Sobic007G192400--Sobic010G181600 Sobic009G252300 Sobic009G252300 Sobic007G192400--Sobic009G252300 Sobic004G259300 Sobic004G259300 Sobic007G192400--Sobic004G259300 Sobic002G203600 Sobic002G203600 Sobic007G192400--Sobic002G203600 Sobic008G036600 Sobic008G036600 Sobic007G192400--Sobic008G036600 Sobic004G141400 Sobic004G141400 Sobic007G192400--Sobic004G141400 Sobic007G192100 Sobic007G192100 Sobic008G108500--Sobic007G192100 Sobic002G176400 Sobic002G176400 Sobic008G108500--Sobic002G176400 Sobic003G189900 Sobic003G189900 Sobic008G108500--Sobic003G189900 Sobic002G401700 Sobic002G401700 Sobic008G108500--Sobic002G401700 Sobic001G036700 Sobic001G036700 Sobic008G108500--Sobic001G036700 Sobic007G038800 Sobic007G038800 Sobic008G108500--Sobic007G038800 Sobic004G122000 Sobic004G122000 Sobic008G108500--Sobic004G122000 Sobic007G117800 Sobic007G117800 Sobic008G108500--Sobic007G117800 Sobic009G086200 Sobic009G086200 Sobic008G108500--Sobic009G086200 Sobic001G188000 Sobic001G188000 Sobic010G069500--Sobic001G188000 Sobic004G328100 Sobic004G328100 Sobic010G069500--Sobic004G328100 Sobic003G308300 Sobic003G308300 Sobic010G069500--Sobic003G308300 Sobic004G329201 Sobic004G329201 Sobic010G069500--Sobic004G329201 Sobic002G304500 Sobic002G304500 Sobic010G069500--Sobic002G304500 Sobic002G377900 Sobic002G377900 Sobic010G069500--Sobic002G377900 Sobic003G255700 Sobic003G255700 Sobic010G069500--Sobic003G255700 Sobic010G153400 Sobic010G153400 Sobic010G069500--Sobic010G153400 Sobic001G306800 Sobic001G306800 Sobic010G069500--Sobic001G306800 Sobic008G006000--Sobic010G181600 Sobic008G006000--Sobic007G192400 Sobic008G006000--Sobic003G353700 Sobic008G006000--Sobic004G141400 Sobic008G006000--Sobic007G077532 Sobic010G255900 Sobic010G255900 Sobic008G006000--Sobic010G255900 Sobic005G185500 Sobic005G185500 Sobic008G006000--Sobic005G185500 Sobic003G117800 Sobic003G117800 Sobic008G006000--Sobic003G117800 Sobic001G280500 Sobic001G280500 Sobic008G006000--Sobic001G280500 Sobic007G177500--Sobic004G259300 Sobic004G016100 Sobic004G016100 Sobic007G177500--Sobic004G016100 Sobic007G177500--Sobic004G116600 Sobic003G005100 Sobic003G005100 Sobic007G177500--Sobic003G005100 Sobic007G177500--Sobic007G192400 Sobic007G177500--Sobic004G218300 Sobic007G177500--Sobic007G077532 Sobic001G281700 Sobic001G281700 Sobic007G177500--Sobic001G281700 Sobic007G177500--Sobic006G130200 Sobic005G170000--Sobic007G077532 Sobic005G170000--Sobic008G006000 Sobic010G225201 Sobic010G225201 Sobic005G170000--Sobic010G225201 Sobic005G170000--Sobic007G192400 Sobic005G123400 Sobic005G123400 Sobic005G170000--Sobic005G123400 Sobic005G170000--Sobic002G203600 Sobic005G170000--Sobic004G016100 Sobic005G170000--Sobic010G255900 Sobic005G170000--Sobic004G141400 Sobic006G203600--Sobic004G116600 Sobic006G203600--Sobic010G181600 Sobic007G218600 Sobic007G218600 Sobic006G203600--Sobic007G218600 Sobic008G111800 Sobic008G111800 Sobic006G203600--Sobic008G111800 Sobic006G203600--Sobic005G049000 Sobic006G203600--Sobic007G077532 Sobic006G203600--Sobic008G006000 Sobic006G203600--Sobic007G192400 Sobic001G424900 Sobic001G424900 Sobic006G203600--Sobic001G424900 Sobic006G144000--Sobic001G017200 Sobic009G017200 Sobic009G017200 Sobic006G144000--Sobic009G017200 Sobic009G059400 Sobic009G059400 Sobic006G144000--Sobic009G059400 Sobic010G237650 Sobic010G237650 Sobic006G144000--Sobic010G237650 Sobic006G144000--Sobic004G180900 Sobic006G144000--Sobic004G116600 Sobic006G144000--Sobic006G130200 Sobic004G313300 Sobic004G313300 Sobic006G144000--Sobic004G313300 Sobic001G425000 Sobic001G425000 Sobic006G144000--Sobic001G425000
Octagon: transcription factors


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